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11461 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens		TXT
GSE18927	University of Washington Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	758	BAM BED CEL TXT WIG SRA Run Selector	Northwest REMC	Jan 06, 2010
GSE26328	DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	53	BAM BIGWIG BROADPEAK NARROWPEAK TXT SRA Run Selector	ENCODE DCC	Dec 29, 2010
GSE28162	L3MBTL2 protein acts in concert with PcG protein mediated monoubiquitination of H2A to establish a repressive chromatin structure [ChIP-Seq data].	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	9	BAM BIGWIG TXT SRA Run Selector	Philip Cayting	Jun 07, 2011
GSE29611	Histone Modifications by ChIP-seq from ENCODE/Broad Institute	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	296	BAM BIGWIG BROADPEAK TXT SRA Run Selector	ENCODE DCC	Jun 02, 2011
GSE33633	Epigenetic changes due to histone eviction induced by anthracycline doxorubicin and aclarubicin	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	3	BAM BED TXT SRA Run Selector	Baoxu Pang	Jun 04, 2013
GSE33664	Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	10	BAM BED BW TXT SRA Run Selector	Guoliang Li	Jan 20, 2012
GSE33722	Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BAM BED TXT	Wei Xie	Feb 15, 2012
GSE34097	The SEC family of RNA Polymerase II elongation factors: gene target specificity and transcriptional output	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	13	BAM BED TXT SRA Run Selector	Alexander (Garrett) Garruss	May 02, 2012
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE57369	The chromatin modifier CHD8 targets autism risk genes during human neurodevelopment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	26	BAM BED BW TXT SRA Run Selector	Justin Cotney	Jan 21, 2015
GSE166483	Cataloging human PRDM9 variability utilizing long-read sequencing technologies reveals PRDM9 population-specificity and two distinct groupings of related alleles	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	18	BAM BEDGRAPH BIGWIG TAB TXT SRA Run Selector	Kevin Brick	Oct 26, 2021
GSE188491	Chromatin accessibility mapping for GWAS risk loci reveals compound genetic effects of neurodevelopment and neurodegenerative disorders in human neurons	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	106	BAM NARROWPEAK TAR TXT	Jubao Duan	Jan 23, 2022
GSE244725	Harnessing HetHydrogel: An Approach to Single-Cell Multi-Omics	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	5	BAM TXT	Guoqiang Zhou	Oct 10, 2023
GSE62492	Genome wide analysis of AR binding sites and histone modifications in prostate cancer	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	23	BAR TXT SRA Run Selector	Ken-ichi Takayama	Feb 08, 2015
GSE63629	Genome-wide maps of SOX9 binding sites in human colorectal cancer cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BAR BED TXT SRA Run Selector	Toni-Ann Mistretta	Jun 08, 2015
GSE112479	The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	100	BB BED BW CSV TXT	Bruno Di Stefano	Oct 03, 2019
GSE118716	Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine resistant breast cancer	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	40	BB BW HIC TXT VCF	Joanna Achinger-Kawecka	Dec 11, 2019
GSE139817	Chromatin dynamics reveal circadian control of human in vitro islet maturation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	169	BB BED TXT	Juan R Alvarez-Dominguez	Nov 02, 2019
GSE159411	Transcription Factor Protein Interactomes Reveal Genetic Determinants in Heart Disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	95	BB BED BW CSV H5 TXT SRA Run Selector	Deepak Srivastava	Feb 18, 2022
GSE283867	Regulation of sarcomere formation and function in the healthy heart requires a titin intronic enhancer.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	32	BB BIGWIG MTX TSV TXT	Seong Won Kim	Dec 10, 2024