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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Methylation profiling by array	Homo sapiens			BW
GSE38548	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by array Genome variation profiling by SNP array Methylation profiling by genome tiling array	Homo sapiens	106		BED BW CEL FPKM_TRACKING PROBSCOREISLAND TXT	Kornelia Polyak	Jun 09, 2015
GSE74519	Trans-effects of chromosome aneuploidies on DNA methylation patterns in human Down syndrome and mouse models	Methylation profiling by array Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	134		BEDGRAPH BW	Benjamin Tycko	Oct 30, 2015
GSE92469	Characterizing the epigenome of glioma stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	157		BED BW FPKM_TRACKING IDAT TXT	Dan Zhou	Feb 23, 2018
GSE100134	Gene expression analysis upon mtDNA depletion	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array	Homo sapiens	108		BW CEL CHP IDAT	Janine Santos	Mar 21, 2018
GSE171074	The potential of epigenetic therapy to target the 3D epigenome in endocrine-resistant breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array Other Methylation profiling by high throughput sequencing	Homo sapiens	88		BED BW HIC IDAT NARROWPEAK TXT	Joanna Achinger-Kawecka	Dec 12, 2021
GSE210277	Synthetic epigenetic reprogramming of mesenchymal to epithelial states using the CRISPR/dCas9 platform in triple negative breast cancer	Methylation profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	45		BROADPEAK BW IDAT NARROWPEAK	Joe Cursons	Apr 17, 2023
GSE205283	β-catenin programs a tissue-specific epigenetic vulnerability in aggressive adrenocortical carcinoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array	Drosophila melanogaster Homo sapiens	48		BW IDAT TXT	Antonio Marcondes Lerario	Apr 25, 2023
GSE202776	Epigenetic heterogeneity and transcriptional drivers of triple-negative breast cancer	Expression profiling by high throughput sequencing Methylation profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	386		BW IDAT NARROWPEAK	Kornelia Polyak	Nov 09, 2023
GSE227853	Genome scale analysis of DNA methylation patterns in prostate cancer patient derived xenograft models	Methylation profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	77		BW IDAT	Brian Hanratty	Dec 31, 2023