GEO Browser - GEO

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34 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by genome tiling array			BED
GSE15220	Genome-wide analysis of differential methylation and gene expression in a testicular cancer cell line	Expression profiling by array Methylation profiling by genome tiling array	Homo sapiens	13	BAR BED CEL CHP	Hoi Hung Cheung	Mar 18, 2009
GSE34941	Integrative Epigenomic Analysis Identifies Biomarkers and Therapeutic Targets in Adult B-Acute Lymphoblastic Leukemia	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	428	BED BIGWIG PAIR	Huimin Geng	Nov 27, 2012
GSE54843	Acute depletion redefines the division of labor among DNA methyltransferases in methylating the human genome	Expression profiling by array Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens	56	BED BIGWIG CEL TXT	Keith D Robertson	Oct 20, 2014
GSE101864	Chronic Cigarette Smoke-Induced Epigenomic, gene expression and chromatin changes in Bronchial Epithelial Cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array Other	Homo sapiens	86	BED IDAT PDF TXT	Hariharan Easwaran	Oct 21, 2017
GSE113372	Evaluation of cross-platform and interlaboratory concordance via consensus modelling of genomic measurements	Expression profiling by array Expression profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	11	BED CEL	Timothy John Peters	Sep 01, 2018
GSE121723	Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	364	BED BIGWIG BW CEL	Bernhard Radlwimmer	Nov 05, 2018
GSE38548	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by SNP array Methylation profiling by array Methylation profiling by genome tiling array	Homo sapiens	106	BED BW CEL FPKM_TRACKING PROBSCOREISLAND TXT	Kornelia Polyak	Jun 09, 2015
GSE46073	Gene expression and genome-wide location analysis of breast cancer cell-lines	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	41	BED TXT	Kornelia Polyak	Jun 17, 2014
GSE63237	Dynamics of MBD2 deposition across methylated DNA regions during malignant transformation of human mammary epithelial cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens	30	BED BEDGRAPH CEL	Robert Dante	Jun 17, 2015
GSE85467	Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by SNP array Methylation profiling by genome tiling array	Homo sapiens	259	BED BEDGRAPH CEL IDAT TXT	Aditi Qamra	Sep 28, 2016
GSE87424	Enhancer Remodeling During Adaptive Bypass to MEK Inhibition Is Attenuated by Pharmacological Targeting of the P-TEFb Complex	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens Mus musculus	167	BED CSV IDAT TXT XLSX	Gary L Johnson	Jan 20, 2017
GSE120558	Gain of function DNMT3A mutations cause microcephalic dwarfism and hypermethylation of Polycomb-regulated regions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	66	BED BIGWIG COV IDAT TXT	Duncan Sproul	Nov 26, 2018
GSE139388	DNA methylation and gene expression changes during acquired resistance to ALK inhibitors	Expression profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	7	BED IDAT MTX TSV	Jong Hwan Kim	Sep 20, 2022
GSE168186	Hepatitis C virus scarring of the epigenome and creates targetable vulnerabilities following viral clearance	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	83	BED IDAT SF	Keith D Robertson	Sep 23, 2021
GSE194050	Iron-dependent epigenetic modulation promotes pathogenic T cell differentiation in lupus	Expression profiling by high throughput sequencing Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	12	BED XLSX	Xiaofei Gao	Jan 23, 2022
GSE14620	Ontoepigenetic profile of mouse liver reveals dynamic regulation of chromatin during development	Genome binding/occupancy profiling by genome tiling array Methylation profiling by genome tiling array	Mus musculus	13	BAR BED CEL	Steven Hart	Jan 29, 2009
GSE22077	MeDIP-on-chip and Pol-II ChIP-on-chip during C2C12 myogenic and BMP2-induced osteogenic differentiation	Genome binding/occupancy profiling by genome tiling array Methylation profiling by genome tiling array	Mus musculus	14	BAR BED CEL	Marlinda Hupkes	Feb 07, 2011
GSE34403	Bisulphite-sequencing of chromatin immunoprecipitated DNA directly informs methylation status of histone-modified DNA	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens	8	BED CSV WIG	Mark Robinson	Jan 18, 2012
GSE85525	Lineage-specific transcription factors regulate DNA methylation dynamics during hematopoietic development	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	18	BED	Takahiro Suzuki	Aug 10, 2017
GSE256033	UHRF1 ubiquitin ligase activity supports the maintenance of low-density CpG methylation	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens	79	BED BW IDAT	Scott Rothbart	Oct 23, 2024