GEO Browser - GEO

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24 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by genome tiling array			BW
GSE162059	Epigenetic biomarkers for EZH2 inhibitor sensitivity in neuroblastoma	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	10	BW IDAT	Hisanori Takenobu	Nov 25, 2020
GSE94368	Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens	19	BED BW IDAT	Ksenia Skvortsova	Mar 17, 2017
GSE199033	Transcriptome and EPIC-based DNA methylation analysis of glioblastoma stem cells and H9NSC (HOXA-AS2 depletion or overexpression), and chromatin states in glioblastoma stem cells (HOXA-AS2 depletion)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	19	BW IDAT	franck court	Apr 15, 2022
GSE204813	Co-expression analysis reveals gene cluster associated with methylation of enhancers and chromosomal instability under TP63 and TRIM29 regulation.	Methylation profiling by genome tiling array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	21	BW IDAT NARROWPEAK	Rinat I Sultanov	Mar 19, 2024
GSE71500	Study of the impact of G9a on DNA methylation in mouse embryonic cells	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	26	BW IGV PAIR	Michael Weber	Nov 12, 2015
GSE144196	Epigenetic drift during long-term culture of cells in vitro	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	34	BW IDAT	Wolfgang Wagner	May 26, 2021
GSE167431	Placental uptake and metabolism as determinants of pregnancy vitamin D status	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	35	BROADPEAK BW IDAT	Miguel R Branco	Feb 25, 2021
GSE152640	Structure of DNA methyltransferases DNMT3A/DNMT3B bound to a nucleosome	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens synthetic construct	36	BW IDAT VCF	Peter A Jones	Jun 17, 2020
GSE132514	Epigenetic remodelling of enhancers in response to estrogen deprivation and re-stimulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	40	BW IDAT NARROWPEAK	Zdenko Herceg	Jan 01, 2020
GSE55426	Domains of genomewide gene expression dysregulation in Down syndrome	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	42	BW PAIR TXT	Audrey Letourneau	Apr 08, 2014
GSE224459	TET1 catalytic activity is required for reprogrammign of imprinting control regions and the patterning of sperm-specific hypomethylated regions	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Mus musculus	63	BEDGRAPH BW CSV IDAT NARROWPEAK	Rexxi Diptya Prasasya	Feb 26, 2024
GSE180495	Gibbin (AHDC1) regulates the mesoderm to pattern epithelial development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	64	BROADPEAK BW IDAT MTX NARROWPEAK TAR TSV	Anthony Oro	Jan 17, 2022
GSE180542	MAFB surrogates the glucocorticoid receptor ability to induce tolerogenesis in dendritic cells	Expression profiling by array Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	64	BW CEL IDAT NARROWPEAK	Esteban Ballestar	Nov 11, 2021
GSE237665	Select EZH2 inhibitors enhance the viral mimicry effects of DNMT inhibition through a mechanism involving Calcium-Calcineurin-NFAT signaling	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens	64	BW IDAT	Scott Rothbart	Feb 26, 2024
GSE243132	METTL7B is an essential epigenetic regulator of lineage specification in glioblastoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	73	BEDGRAPH BW IDAT MTX TSV	James Nicholson	Jul 01, 2024
GSE131318	Metabolic changes during human adipocyte differentiation promote stable DNA hydroxymethylation and binding of acetylated NEIL1 to adipogenic enhancers	Methylation profiling by genome tiling array Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	77	BW IDAT	Clarissa Feuerstein-Akgoz	Feb 01, 2024
GSE256135	DNA hypomethylation promotes UHRF1- and SUV39H1/H2-dependent crosstalk between H3K18ub and H3K9me3 to reinforce heterochromatin states	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by array	Homo sapiens	77	BROADPEAK BW IDAT NARROWPEAK TXT	Scott Rothbart	Dec 03, 2024
GSE256033	UHRF1 ubiquitin ligase activity supports the maintenance of low-density CpG methylation	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens	79	BED BW IDAT	Scott Rothbart	Oct 23, 2024
GSE224061	Epigenetic dosage identifies two major and functionally distinct β cell subtypes	Methylation profiling by genome tiling array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	80	BW IDAT	Luca Fagnocchi	Feb 16, 2023
GSE38548	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by array Genome variation profiling by SNP array Methylation profiling by genome tiling array	Homo sapiens	106	BED BW CEL FPKM_TRACKING PROBSCOREISLAND TXT	Kornelia Polyak	Jun 09, 2015