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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			BED
GSE124035	5-Formylcytosine Landscapes of Human Preimplantation Embryos at Single-cell Resolution	Methylation profiling by high throughput sequencing	Homo sapiens	130	BED	Lin Li	Aug 02, 2020
GSE40167	5-hmC in the brain: abundance in synaptic genes and differences at the exon-intron boundary	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	795	BED CEL	Shraddha Pai	Aug 24, 2012
GSE40158	5-hmC in the brain: abundance in synaptic genes and differences at the exon-intron boundary (MRE-Seq)	Methylation profiling by high throughput sequencing	Homo sapiens	9	BED SRA Run Selector	Shraddha Pai	Aug 24, 2012
GSE90495	5-hydroxymethylcytosine (5hmC) Profiling of HUES8 WT and HUES8 TET1/2/3 TKO hESCs	Methylation profiling by high throughput sequencing	Homo sapiens	1	BED SRA Run Selector	Nipun Verma	Dec 01, 2017
GSE150015	5-hydroxymethylcytosine (5hmC) profiling of H1 WT hESCs	Methylation profiling by high throughput sequencing	Homo sapiens	2	BED SRA Run Selector	Heng Pan	Mar 19, 2021
GSE35238	5-hydroxymethylcytosine is linked with expression of brain-specific protein-coding genes but not brain-specific microRNA host genes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	6	BED BEDGRAPH	Sheroy Minocherhomji	Sep 01, 2015
GSE47592	5-hydroxymethylcytosine marks promoters in colon that resist hypermethylation in cancer	Expression profiling by array Methylation profiling by array Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	137	BED	Chandra Chilamakuri	Feb 03, 2015
GSE47590	5-hydroxymethylcytosine marks promoters in colon that resist hypermethylation in cancer [seq]	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	17	BED SRA Run Selector	Chandra Chilamakuri	Feb 03, 2015
GSE69905	5-hydroxymethylcytosine poises expression of genes involved in hematopoietic differentiation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	14	BED TXT SRA Run Selector	Xavier Tekpli	Jun 02, 2016
GSE75941	5-hydroxymethylcytosine-mediated alteration of transposon activity associated with Preeclampsia	Methylation profiling by high throughput sequencing	Homo sapiens	3	BED SRA Run Selector	Peng Jin	May 09, 2016
GSE37050	5-hydroxymethylcytosine-mediated epigenetic modifications between iPSCs and hESCs	Methylation profiling by high throughput sequencing	Homo sapiens	19	BED SRA Run Selector	Tao Wang	Mar 21, 2013
GSE31343	5-hydroxymethylcytosine: the sixth DNA base	Methylation profiling by high throughput sequencing	Mus musculus	5	BED SRA Run Selector	H.G. Stunnenberg	Nov 24, 2011
GSE131902	5hmC RNA role in mouse Embryonic stem cell differentiation to Embryonic bodies	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	57	BED TXT	Martin Bizet	Jul 16, 2020
GSE131900	5hmC RNA role in mouse Embryonic stem cell differentiation to Embryonic bodies [hMeRIP-seq]	Methylation profiling by high throughput sequencing	Mus musculus	26	BED SRA Run Selector	Martin Bizet	Jul 16, 2020
GSE97992	5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	29	BED BW	Jia Li	Apr 18, 2018
GSE97988	5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation (CMS)	Methylation profiling by high throughput sequencing	Homo sapiens	12	BED BW SRA Run Selector	Jia Li	Apr 18, 2018
GSE86795	6mA-DNA-binding factor Jumu controls maternal-to-zygotic transition upstream of Zelda	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster	40	BED TXT SRA Run Selector	Shunmin He	Apr 18, 2019
GSE183764	9sCa: MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	244	BED BEDPE BW RDATA RDS TSV TXT SRA Run Selector	Asifa Akhtar	Aug 10, 2023
GSE74398	A Dicer-Independent Route for Biogenesis of siRNAs that Direct DNA Methylation in Arabidopsis	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	76	BED TXT SRA Run Selector	Yijun Qi	Dec 17, 2015
GSE275545	A Multi-omics Study of Epigenetic Changes in Type II Alveolar Cells of A/J Mice Exposed to Environmental Tobacco Smoke	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	72	BED CSV TXT	Natalia Tretyakova	Sep 18, 2024