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342 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			COV
GSE94075	The Arabidopsis DNA methylome is relatively impervious to abiotic stress	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	29	BED COV SRA Run Selector	Diep R Ganguly	Oct 03, 2017
GSE103609	iMEF SDHC-loss RRBS time course	Methylation profiling by high throughput sequencing	Mus musculus	12	BED COV SRA Run Selector	John Andrew Smestad	Nov 21, 2017
GSE103663	Characterization and metabolic synthetic lethal testing in a new model of SDH-loss familial pheochromocytoma and paraganglioma	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	28	BED COV CSV	John Andrew Smestad	Nov 21, 2017
GSE109545	A novel role of Tet1/2 proteins in cell cycle progression of trophoblast stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	15	BED COV CSV SRA Run Selector	Myriam Hemberger	May 02, 2018
GSE120558	Gain of function DNMT3A mutations cause microcephalic dwarfism and hypermethylation of Polycomb-regulated regions	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	66	BED BIGWIG COV IDAT TXT	Duncan Sproul	Nov 26, 2018
GSE129673	EpiMethylTag simultaneously detects ATAC-seq or ChIP-seq signals with DNA methylation	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	26	BED BEDGRAPH BW COV NARROWPEAK TSV TXT SRA Run Selector	Priscillia Lhoumaud	Oct 01, 2019
GSE129691	Setd2 deficiency impaired erythroid differentiation and accelerated Myelodysplastic Syndrome(MDS) - associated leukemogenesis through S100A8 and S100A9	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	18	BED BROADPEAK BW COV TXT XLSX SRA Run Selector	Jiaying Zhang	Jul 02, 2020
GSE130140	Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens	92	BED BW COV MATRIX NARROWPEAK SF TAR TXT SRA Run Selector	Zhenjia Wang	Aug 19, 2020
GSE155269	OsChz1 acts as a histone chaperone in modulating chromatin organization and genome function in rice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa	34	BED BIGWIG COV	Liufan Yin	Oct 15, 2020
GSE156409	Age-associated cryptic transcription in mammalian stem cells is linked to permissive chromatin at cryptic promoters	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	52	BED BW COV TXT	Weiwei Dang	Jul 15, 2021
GSE159043	H3K27me3 shapes DNA methylome by inhibiting UHRF1-mediated H3 ubiquitination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	23	BED BROADPEAK BW COV	Falong Lu	Jun 27, 2022
GSE224563	DNA methylation in the mouse cochlea promotes maturation of supporting cells and contributes to the failure of hair cell regeneration	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	52	BED BW COV H5 H5SEURAT MTX RDS TSV	John Duc Nguyen	Feb 07, 2023
GSE244698	Gestational diabetes in mice induces hematopoietic memory that impacts the long-term health of the offspring	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	20	BED COV TXT	Kyle McCracken	Nov 13, 2023
GSE245212	Epigenomic maps of the rainbow trout reveal epiQTL signatures of genetic selection and regulatory elements involved in controlling gene expression and genome evolution	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oncorhynchus mykiss	78	BED BROADPEAK COV	Rafet Al-Tobasei	Oct 03, 2024
GSE247855	FoxA1/2-dependent epigenomic reprogramming drives lineage switching in lung adenocarcinoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	93	BED BW COV TXT	Katherine Gillis	Sep 11, 2024
GSE85356	DNA methylation repels binding of hypoxia-inducible transcription factors to maintain tumour immunotolerance	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	285	BEDGRAPH COV TSV TXT	Jieyi Xiong	Jun 18, 2020
GSE104245	Whole genome methylation profiling in HepG2 cells using WGBS (Whole Genome Bisulfite Sequencing)	Methylation profiling by high throughput sequencing	Homo sapiens	2	BEDGRAPH COV	Eric M Mendenhall	Dec 30, 2021
GSE104246	DNA methylation profiling of TF bound sites using ChIPBS (ChIP Bisulfite Sequencing)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	14	BEDGRAPH COV SRA Run Selector	Eric M Mendenhall	Dec 30, 2021
GSE104248	Towards an integrative map of a single cell type's transcription factor landscape	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	16	BEDGRAPH COV	Eric M Mendenhall	Dec 30, 2021
GSE113946	Widespread transposable element-driven oncogene expression in cancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	6	BEDGRAPH BIGWIG COV SRA Run Selector	Daofeng Li	Feb 05, 2019