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82 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			GFF
GSE14570	Extensive demethylation of repetitive elements during seed development underlies gene imprinting	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	BEDGRAPH GFF PAIR TXT SRA Run Selector	Jorja Henikoff	Jun 12, 2009
GSE15922	Genome-wide demethylation of Arabidopsis endosperm	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	GFF TXT SRA Run Selector	Toshiro Nishimura	Jun 16, 2009
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Postia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE22591	Local DNA hypomethylation activates genes in rice endosperm	Methylation profiling by high throughput sequencing	Oryza sativa	4	GFF TXT SRA Run Selector	Toshiro Nishimura	Nov 01, 2010
GSE21714	Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors	Methylation profiling by high throughput sequencing	Homo sapiens	3	BAM GFF SRA Run Selector	Gareth Wilson	Jan 01, 2011
GSE25686	[E-TABM-482] DNA methylome of human spermatozoa	Methylation profiling by high throughput sequencing	Homo sapiens	1	GFF	European Bioinformatics Institute	Feb 05, 2011
GSE28314	Genome-wide study of DNA methylation in AML by MeDIP-seq	Methylation profiling by high throughput sequencing	Homo sapiens	16	GFF TXT WIG SRA Run Selector	Jacek Dariusz Marzec	Apr 02, 2012
GSE37022	Genome-Wide Analysis of Acute Myeloid Leukemia Reveals Leukemia-Specific Methylome and Subtype-Specific Hypomethylation of Repeats	Methylation profiling by high throughput sequencing Expression profiling by array	Homo sapiens	22	GFF WIG	Jacek Dariusz Marzec	Apr 03, 2012
GSE40501	Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA.	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	3	GFF SRA Run Selector	Joseph Calarco	Aug 31, 2012
GSE37202	Evolutionary Significance of DNA Methylation in Human and Chimpanzee Brains	Methylation profiling by high throughput sequencing	Homo sapiens Pan troglodytes	6	GFF SRA Run Selector	Jia Zeng	Sep 04, 2012
GSE38935	Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	GFF SRA Run Selector	Toshiro Nishimura	Sep 21, 2012
GSE40133	The Methylomes of Six Bacteria	Methylation profiling by high throughput sequencing	Bacillus cereus Campylobacter jejuni Chromohalobacter israelensis Geobacter metallireducens Vibrio breoganii	6	CSV GFF	Tyson A Clark	Oct 04, 2012
GSE39045	Deposition of histone variant H2A.Z within gene bodies regulates responsive genes	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Arabidopsis thaliana	38	GFF SRA Run Selector	Toshiro Nishimura	Dec 13, 2012
GSE45178	Methylome of Salmonella enterica subsp. Enterica serovar Javiana str. CFSAN001992 by PacBio SMRT Sequencing	Methylation profiling by high throughput sequencing	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992	1	CSV GFF SRA Run Selector	Justin St. Giles Payne	Mar 15, 2013
GSE41302	DDM1 and RdDM are the major regulators of transposon DNA methylation in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	33	GFF SRA Run Selector	Toshiro Nishimura	Apr 17, 2013
GSE44898	Imprinted expression of genes and small RNA is triggered by localized demethylation of the maternal genome in rice endosperm	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa	16	GFF SRA Run Selector	Toshiro Nishimura	May 01, 2013
GSE46428	High-throughput sequencing of methylated cytosine enriched by modification-dependent restriction endonuclease MspJI	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	2	GFF TXT SRA Run Selector	Desheng Gong	May 01, 2013
GSE50100	Unlock the mystery of the hard-to-sequence phage genome: discovering a novel mechanism of bacterial immunity	Methylation profiling by high throughput sequencing	Pseudomonas phage PaP1	1	CSV GFF SRA Run Selector	Shuguang Lu	Aug 22, 2013
GSE38483	Global DNA methylation study of trisomy 8 AML	Methylation profiling by high throughput sequencing	Homo sapiens	3	GFF WIG SRA Run Selector	Jacek Dariusz Marzec	Feb 13, 2014
GSE55390	Methylome of soil bacterium Gemmatirosa kalamazoonensis KBS708, a member of the rarely cultivated Gemmatimonadetes phylum	Methylation profiling by high throughput sequencing	Gemmatirosa kalamazoonensis	1	CSV GFF SRA Run Selector	Tyson A Clark	Mar 12, 2014