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82 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			GFF
GSE21714	Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors	Methylation profiling by high throughput sequencing	Homo sapiens	3	BAM GFF SRA Run Selector	Gareth Wilson	Jan 01, 2011
GSE81436	The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	17	BAM BW CSV GFF WIG XLS SRA Run Selector	chao zhou	Jun 13, 2016
GSE59980	Analysis of an artificial zinc finger epigenetic modulator: widespread binding but limited regulation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	25	BED GFF TXT SRA Run Selector	Matt Grimmer	Aug 01, 2014
GSE60106	Global loss of DNA methylation uncovers intronic enhancers in genes	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	11	BED BW GFF SRA Run Selector	Peggy J Farnham	Sep 10, 2014
GSE96521	N6-adenine DNA methylation in Tetrahymena	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Tetrahymena thermophila	4	BED GFF SRA Run Selector	Chao Lu	Oct 11, 2017
GSE96994	DDM1/Lsh remodelers allow methylation of DNA wrapped in nucleosomes	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	15	BED BW GFF TXT SRA Run Selector	David B. Lyons	Nov 15, 2017
GSE103145	Identification and analysis of adenine N6-methylation sites in the rice genome	Methylation profiling by high throughput sequencing	Oryza sativa Japonica Group	6	BED GFF SRA Run Selector	chao zhou	Jun 10, 2018
GSE176526	Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	14	BED GFF TXT SRA Run Selector	Xiaoqi Feng	Feb 15, 2024
GSE14570	Extensive demethylation of repetitive elements during seed development underlies gene imprinting	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	BEDGRAPH GFF PAIR TXT SRA Run Selector	Jorja Henikoff	Jun 12, 2009
GSE85975	DNA methylation dynamics during early plant life	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	5	BEDGRAPH GFF SRA Run Selector	Daniel Bouyer	Aug 23, 2017
GSE199214	The steroid hormone estriol (E3) regulates epigenetic programming of fetal mouse brain and reproductive tract	Expression profiling by array Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	24	BEDGRAPH CEL CHP GFF	Yuping Zhou	Mar 31, 2022
GSE66504	Identification of N6-adenine methylation in C. elegans DNA	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	3	BW GFF NARROWPEAK SRA Run Selector	Lei Gu	May 05, 2015
GSE68860	Genome-wide single-molecule sequencing of 6-methyladenine in eukaryotes	Methylation profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana Auricularia delicata Caenorhabditis elegans Chlamydomonas reinhardtii Drosophila melanogaster Nannochloropsis oceanica Saccharomyces cerevisiae	11	BW CSV GFF SRA Run Selector	Denis Tolkunov	Sep 01, 2017
GSE108784	N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa	22	BW GFF TXT	Xiaofeng Gu	Dec 10, 2018
GSE115308	DNA Methylation by Restriction Modification Systems Affects the Global Transcriptome Profile in Borrelia burgdorferi.	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Borreliella burgdorferi	11	BW CSV GFF SRA Run Selector	Tim Casselli	Jun 05, 2018
GSE122394	DNA methylation and histone H1 jointly repress transposable elements and aberrant intragenic transcripts	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	132	BW GFF SRA Run Selector	Jaemyung Choi	Nov 20, 2019
GSE179796	Histone H1 prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	62	BW GFF SRA Run Selector	Jaemyung Choi	Dec 01, 2021
GSE183785	Epigenetic inheritance mediates phenotypic evolution in natural populations	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	25	BW GFF SRA Run Selector	Jaemyung Choi	Jun 30, 2022
GSE40133	The Methylomes of Six Bacteria	Methylation profiling by high throughput sequencing	Bacillus cereus Campylobacter jejuni Chromohalobacter israelensis Geobacter metallireducens Vibrio breoganii	6	CSV GFF	Tyson A Clark	Oct 04, 2012
GSE45178	Methylome of Salmonella enterica subsp. Enterica serovar Javiana str. CFSAN001992 by PacBio SMRT Sequencing	Methylation profiling by high throughput sequencing	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992	1	CSV GFF SRA Run Selector	Justin St. Giles Payne	Mar 15, 2013