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3489 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			SRA Run Selector
GSE195869	Comparative analysis of genome-scale, base-resolution DNA methylation profiles across 580 animal species	Methylation profiling by high throughput sequencing	Abronia anzuetoi Acanthosaura Acanthurus triostegus Accipiter gentilis Accipiter nisus Acinonyx Acomys Acryllium vulturinum Agapornis Agapornis canus Agapornis lilianae Agapornis personatus Agapornis taranta Ailurus fulgens Alectis ciliaris Alitta succinea Amandava subflava Amazona Amazona agilis Amblyglyphidodon leucogaster Ambystoma Ambystoma andersoni Ambystoma mexicanum Ammodytes dubius Ammodytes hexapterus Ammotragus Anas platyrhynchos Anoplopoma fimbria Antidorcas Antilope Aonyx cinereus Aotidae Apodemus flavicollis Apodemus sylvaticus Apostichopus parvimensis Aptenodytes patagonicus Aquila heliaca Ara Ara ararauna Ardea Ariopsis felis Ascidiella aspersa Asio otus Astrochelys radiata Astrochelys yniphora Athene noctua Atherinomorus vaigiensis Axis axis Balearica pavonina Bathymaster signatus Batoidea Bison bonasus Boa constrictor Bodianus diana Boltenia echinata Boltenia ovifera Bos Boselaphus tragocamelus Bothriechis schlegelii Botryllus schlosseri Brachylophus Branchiostoma floridae Bubalus Bubo bubo Buteo Buteo buteo Buteo lagopus Bycanistes bucinator Cacatua alba Caiman yacare Callithrix jacchus Callocephalon fimbriatum Callorhinchus milii Caloenas nicobarica Calyptocephallela gayi Camelus dromedarius Camelus ferus Canis aureus Canis lupus Canis lupus familiaris Canis lupus lycaon Cantherhines pardalis Capra Capra aegagrus Capreolus capreolus Capricornis Capromyidae Capromys pilorides Carcharias taurus Cariamidae Carollia perspicillata Castoridae Casuarius casuarius Caviidae Cebinae Centropomus robalito Centropristis striata Centropyge heraldi Cephalopholis miniata Cercopithecus Cervidae Cervus elaphus Cervus nippon Chaetodon lineolatus Chaetodon lunula Chamaeleo calyptratus Chamaeleonidae Charadriidae Chauna torquata Cheilodipterus quinquelineatus Cheilopogon californicus Chelydra serpentina Chiroxiphia pareola Chloris chloris Chloropsis Choerodon fasciatus Chromis punctipinnis Chrysopelea Ciconia ciconia Ciconiidae Ciona intestinalis Circus aeruginosus Circus cyaneus Cirrhilabrus lineatus Cirrhilabrus roseafascia Clavelina picta Clupea harengus Coccothraustes Coliiformes Colobus guereza Colobus polykomos Columba livia Columbidae Connochaetes Copsychus malabaricus Coracias cyanogaster Coracias garrulus Coris caudimacula Coris gaimard Cornufer guentheri Coronella austriaca Correlophus ciliatus Corucia zebrata Corvus Corvus corax Corvus corone Corvus frugilegus Coryphaenoides acrolepis Coturnix coturnix Coturnix delegorguei Cricetinae Cricetomyinae Cricetus Crocodylia Crotalus Cryptacanthodes maculatus Ctenochaetus striatus Cucumaria frondosa Cuora mccordi Cuora mouhotii Cyanoliseus patagonus Cyanoloxia brissonii Cyclopsitta diophthalma Cyclopterus lumpus Cyclura Cyclura cornuta Cygnus cygnus Cygnus melancoryphus Cynictis Cynomys Cynoscion regalis Cyprinus carpio Dama dama Danio rerio Dascyllus aruanus Dasypodidae Dendrocygna viduata Dinemellia Diodon hystrix Dolichotis Dolichotis patagonum Doryteuthis pealeii Dracaena guianensis Dromaius novaehollandiae Ducula bicolor Duttaphrynus melanostictus Echinarachnius parma Ecsenius Ecteinascidia turbinata Elephas maximus indicus Eliomys quercinus Elops affinis Embiotoca jacksoni Emydidae Equus Equus asinus asinus Equus zebra Erethizon Erinaceidae Erpeton Erythrura Esox lucius Eudyptes chrysocome Eumyias panayensis Eunectes Euplectes Euplectes orix Eurypygidae Falco cherrug Falco peregrinus Falco tinnunculus Felis catus Felis silvestris Fistularia commersonii Folivora Fromia Fromia indica Furcifer pardalis Gadus chalcogrammus Gadus morhua Galeocerdo cuvier Gallicolumba Gallus Gallus gallus Garrulus glandarius Gekkonidae Geochelone Geoemyda spengleri Geopelia placida Geronticus eremita Giraffa giraffa Glis glis Glyptocephalus cynoglossus Glyptocephalus zachirus Graptemys Grus japonensis Grus paradisea Gymnothorax moringa Gypaetus Haemulon flavolineatum Haliaeetus albicilla Haliaeetus leucocephalus Halichoeres trimaculatus Halocynthia pyriformis Heleophrynidae Heloderma Hemilepidotus jordani Hemisphaeriodon Hemitragus Hemitripterus americanus Heterocephalus Hippoglossina oblonga Hippoglossoides elassodon Hippoglossoides platessoides Hippotragus Hippotragus equinus Histrio histrio Holothuria Holothuria atra Holothuria cinerascens Homarus americanus Hoplobatrachus tigerinus Hydrochoerus hydrochaeris Hypanus americanus Hypselecara coryphaenoides Hystricidae Iguanidae Illex illecebrosus Incilius alvarius Irena puella Jacanidae Jaculus Kobus Kobus leche Labroides bicolor Laemanctus Lagostomus maximus Lama glama Lampropeltis Lamprotornis chalcurus Leiocephalus Lemur Leontocebus fuscicollis Leontopithecus Leontopithecus chrysomelas Lepas anatifera Lepidopsetta polyxystra Leptailurus Leptoclinus maculatus Leptoptilos crumenifer Lepus europaeus Lepus timidus Lethenteron camtschaticum Lethrinus atkinsoni Leucoraja erinaceus Leucoraja ocellata Lissemys punctata Loligo vulgaris Lonchura oryzivora Lophius piscatorius Loriculus galgulus Loweina rara Loweina terminata Lumpenus lampretaeformis Lutjanus mahogoni Lutjanus quinquelineatus Lutra lutra Lynx lynx Lyrurus tetrix Lytechinus variegatus Macaca Macaca silenus Macaca sylvanus Macropodidae Macropus Macroscelidea Macroscelides proboscideus Magallana gigas Malacochersus Marmota Martes foina Meles meles Melopsittacus Merops apiaster Merops bullockoides Milvus milvus Mimus polyglottos Molgula citrina Monacanthidae Morone saxatilis Mullus surmuletus Mungos mungo Muntiacus Mus musculus Musophaga Musophagidae Mustela Mustela putorius Mustelidae Mustelus canis Mya arenaria Myocastor coypus Myoxocephalus octodecemspinosus Myzopsetta ferruginea Naja Nanger dama Nardoa novaecaledoniae Nasua Natrix tessellata Nectariniidae Negaprion brevirostris Neoniphon sammara Neurergus Notamacropus parma Notamacropus rufogriseus Nothobranchius furzeri Nyctereutes Nymphicus hollandicus Octopus vulgaris Onuxodon fowleri Ophioderma panamensis Ophiopteris papillosa Ophiothrix spiculata Oplurus Oryctolagus cuniculus Osteoglossum bicirrhosum Ostorhinchus aureus Ostorhinchus moluccensis Ostorhinchus rueppellii Ostrea edulis Otaria Ovis aries Ovis orientalis Oxycercichthys veliferus Oxycheilinus digramma Oxylebius pictus Pachyuromys Panthera leo Panthera onca Panthera pardus Panthera tigris Papio Papio hamadryas Paracanthurus hepatus Paracirrhites forsteri Paralichthys dentatus Parapercis xanthozona Paroedura picta Parupeneus spilurus Parus major Passer domesticus Patiria miniata Pelecanus Pelecanus crispus Penaeus Perdix perdix Petauridae Petaurus breviceps Phalacrocorax carbo Phascolarctos cinereus Phasianus colchicus Philomachus Phloeomys Phocidae Phodopus campbelli Phoenicopteriformes Photoblepharon palpebratum Phyllopteryx taeniolatus Picus viridis Pisaster brevispinus Pisaster giganteus Pithecia pithecia Pitta moluccensis Platax teira Plegadis falcinellus Pleoticus muelleri Pleurogrammus monopterygius Ploceus cucullatus Podothecus accipenserinus Pogona barbata Pollachius virens Polychrus marmoratus Polypedates otilophus Pomacentrus coelestis Pomatomus saltator Pongo Potamochoerus porcus Prionotus carolinus Pristigenys alta Probosciger aterrimus Procyon lotor Psammomys obesus Psarisomus dalhousiae Pseudanthias Pseudanthias ventralis Pseudobalistes fuscus Pseudomonacanthus peroni Psittacus Pterocaesio marri Pteropus Ptilinopus Ptilinopus pulchellus Puma concolor Pycnonotus barbatus Python molurus Python regius Pythonidae Pytilia melba Rangifer tarandus Rattus norvegicus Rattus rattus Recurvirostra avosetta Rhabdamia gracilis Rhacophorus reinwardtii Rhea americana Rhinecanthus aculeatus Rhinocerotidae Rhinogobiops nicholsii Rhinoptera bonasus Rhyticeros narcondami Riftia pachyptila Rollulus Rupicapra rupicapra Saccoglossus kowalevskii Saguinus Saguinus imperator Saguinus mystax Saguinus oedipus Saimiriinae Salmo salar Salmo trutta Salvelinus alpinus Salvelinus umbla Sarcophilus Sauromalus Scandentia Scincidae Sciurus vulgaris Scolopsis bilineata Scophthalmus aquosus Scopus umbretta Scyliorhinus retifer Sebastes atrovirens Sebastes borealis Sebastes caurinus Sebastes chrysomelas Sebastes constellatus Sebastes hopkinsi Sebastes miniatus Sebastes mystinus Sebastes norvegicus Sebastes ovalis Sebastes paucispinis Sebastes semicinctus Sebastolobus alascanus Semicossyphus pulcher Serinus Shinisaurus crocodilurus Spatula querquedula Spermophilus Spheniscus humboldti Sphoeroides maculatus Spinus spinus Squalus acanthias Stenotomus chrysops Stichopus chloronotus Strigiformes Strix aluco Strix uralensis Strongylocentrotus droebachiensis Strongylocentrotus purpuratus Struthio camelus Sturnus vulgaris Styela montereyensis Sufflamen chrysopterum Suricata Sus scrofa Sus scrofa domesticus Sylvia atricapilla Tamias Tamiops Tapirus Taurotragus Tayassuidae Terrapene Testudinidae Testudo hermanni Testudo kleinmanni Tetrao urogallus Tetrastes bonasia Theloderma Theropithecus gelada Thunnus albacares Thyonella gemmata Tiliqua rugosa Tiliqua scincoides Tinca tinca Tockus alboterminatus Tockus deckeni Tockus flavirostris Tockus nasutus Trachemys Trachemys scripta elegans Trachemys scripta scripta Trachyphonus erythrocephalus Tragelaphus angasii Tragelaphus spekii Tragulus javanicus Triglops scepticus Tringa totanus Trioceros jacksonii Tupaia Upupa epops Uraeginthus bengalus Uromastyx Uromastyx ocellata Urophycis tenuis Ursus Ursus arctos Vanellus armatus Varanus Varanus exanthematicus Varanus gouldii Varecia Vermilingua Vicugna Vicugna pacos Vidua paradisaea Vipera ammodytes Vipera berus Vulpes vulpes Xenagama wilmsi Xiphias gladius Yangochiroptera Yinpterochiroptera Zamenis longissimus Zaprora silenus Zenopsis conchifer Zoarces americanus Zosteropidae	3023	BED SRA Run Selector	Christoph Bock	Jun 18, 2022
GSE69872	The Epigenomic Landscape of Prokaryotes	Methylation profiling by high throughput sequencing	Acetivibrio clariflavus 4-2a Acetivibrio thermocellus ATCC 27405 Acetivibrio thermocellus DSM 1313 Acetobacterium woodii DSM 1030 Acidobacteriaceae bacterium KBS 146 Acidobacteriaceae bacterium TAA 166 Acidovorax sp. JHL-3 Actinobacillus succinogenes 130Z Actinosynnema mirum DSM 43827 Agrobacterium fabrum str. C58 Akkermansia muciniphila ATCC BAA-835 Algoriphagus marincola HL-49 Alicyclobacillus macrosporangiidus CPP55 Allomeiothermus silvanus DSM 9946 Alteromonas sp. ALT199 Aminiphilus circumscriptus DSM 16581 Aminobacterium colombiense DSM 12261 Anoxybacillus flavithermus WK1 Arthrobacter sp. 31Y Asinibacterium sp. OR53 Bacillus spizizenii str. W23 Bacteroides sp. 14(A) Bernardetia litoralis DSM 6794 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 Bradyrhizobium elkanii USDA 76 Bryobacter aggregatus MPL3 Butyrivibrio sp. AE3003 Butyrivibrio sp. AE3004 Butyrivibrio sp. FCS014 Caldicoprobacter oshimai DSM 21659 Caldithrix abyssi DSM 13497 Calidithermus chliarophilus DSM 9957 Capnocytophaga ochracea DSM 7271 Cellulomonas sp. KRMCY2 Cellulophaga algicola DSM 14237 Cellulophaga lytica DSM 7489 Cellvibrionaceae bacterium 1162T.S.0a.05 Chloroflexus aggregans DSM 9485 Clostridioides difficile 630 Clostridioides mangenotii LM2 Clostridium algidicarnis Clostridium perfringens ATCC 13124 Clostridium sp. 12(A) Clostridium sp. ASBs410 Clostridium sp. KNHs205 Cohnella panacarvi Gsoil 349 Coraliomargarita akajimensis DSM 45221 Corynebacterium aurimucosum ATCC 700975 Cronobacter Desulfobacca acetoxidans DSM 11109 Desulfohalovibrio reitneri Desulforegula conservatrix Mb1Pa Desulfospira joergensenii DSM 10085 Desulfotignum balticum DSM 7044 Desulfurobacterium sp. TC5-1 Dinoroseobacter shibae DFL 12 = DSM 16493 Dyadobacter fermentans DSM 18053 Echinicola vietnamensis DSM 17526 Enterococcus faecalis 68A Enterococcus gallinarum Escherichia coli CFT073 Escherichia coli str. K-12 substr. MG1655 Eubacterium sp. AB3007 Exiguobacterium acetylicum DSM 20416 Exiguobacterium antarcticum DSM 14480 Exiguobacterium aurantiacum DSM 6208 Exiguobacterium chiriqhucha Exiguobacterium oxidotolerans JCM 12280 Fervidobacterium nodosum Rt17-B1 Flavimarina sp. Hel_I_48 Flavobacterium psychrophilum JIP02/86 Flexistipes sinusarabici DSM 4947 Galbibacter orientalis Geopsychrobacter electrodiphilus DSM 16401 Gillisia limnaea DSM 15749 Gillisia sp. JM1 Gracilinema caldarium DSM 7334 Halomicrobium katesii DSM 19301 Haloterrigena turkmenica DSM 5511 Hippea alviniae EP5-r Hippea sp. KM1 Hirschia baltica ATCC 49814 Holophaga foetida DSM 6591 Hydrogenovibrio crunogenus XCL-2 Hydrogenovibrio kuenenii DSM 12350 Hydrogenovibrio marinus DSM 11271 Hydrogenovibrio sp. MA2-6 Kallotenue papyrolyticum Kangiella aquimarina DSM 16071 Klebsiella aerogenes FGI35 Klebsiella oxytoca BRL6-2 Lachnobacterium bovis Lachnoclostridium phytofermentans KNHs212 Lachnoclostridium phytofermentans KNHs2132 Lachnospiraceae bacterium AC2012 Lachnospiraceae bacterium AC2029 Lachnospiraceae bacterium AC2031 Lacrimispora indolis DSM 755 Lacrimispora indolis SR3 Lactiplantibacillus plantarum Lactococcus lactis subsp. lactis Leptolyngbya sp. PCC 6406 Levilactobacillus brevis AG48 Limisalsivibrio acetivorans Maribacter sp. Hel_I_7 Marinithermus hydrothermalis DSM 14884 Mastigocladopsis repens PCC 10914 Mediterraneibacter gnavus AGR2154 Meiothermus ruber DSM 1279 Methanocaldococcus jannaschii DSM 2661 Methanocorpusculum labreanum Z Methanohalophilus mahii DSM 5219 Methanospirillum hungatei JF-1 Methanothermus fervidus DSM 2088 Methylobacter tundripaludum 21/22 Methylobacterium sp. 10 Methylobacterium sp. EUR3 AL-11 Methylocystis sp. LW5 Methylohalobius crimeensis 10Ki Methylophilaceae bacterium 11 Methylophilus sp. 1 Methylophilus sp. 42 Methylophilus sp. 5 Methylorubrum extorquens AM1 Methylotenera sp. 73s Methylotenera versatilis 79 Microbacterium sp. KROCY2 Mycoplasmopsis bovis PG45 Neisseria gonorrhoeae FA 1090 Neisseria meningitidis FAM18 Niabella soli DSM 19437 Nitratifractor salsuginis DSM 16511 Nitriliruptor alkaliphilus DSM 45188 Nocardia sp. BMG111209 Nocardia sp. BMG51109 Oceanicola sp. HL-35 Orenia marismortui DSM 5156 Oxalobacteraceae bacterium AB_14 Palaeococcus ferrophilus DSM 13482 Parabacteroides distasonis ATCC 8503 Patulibacter minatonensis DSM 18081 Pediococcus acidilactici AGR20 Pedobacter heparinus DSM 2366 Pelobacter seleniigenes DSM 18267 Peptostreptococcaceae bacterium VA2 Persephonella Phaeobacter inhibens DSM 17395 Phocaeicola salanitronis DSM 18170 Planctopirus limnophila DSM 3776 Polaribacter sp. Hel_I_88 Polaromonas sp. EUR3 1.2.1 Polycyclovorans algicola TG408 Pontibacter actiniarum DSM 19842 Prevotella sp. 10(H) Prevotella sp. HUN102 Pseudacidobacterium ailaaui Pseudarthrobacter chlorophenolicus A6 Pseudobutyrivibrio ruminis HUN009 Pseudofrankia sp. DC12 Pseudomonas aeruginosa NCAIM B.001380 Psychrilyobacter atlanticus DSM 19335 Pyrococcus horikoshii OT3 Rhizobium etli CIAT 652 Rhodopseudomonas palustris CGA009 Rikenella microfusus DSM 15922 Robinsoniella sp. KNHs210 Ruminiclostridium josui JCM 17888 Ruminococcaceae bacterium AE2021 Ruminococcus albus AD2013 Ruminococcus flavefaciens AE3010 Ruminococcus sp. HUN007 Ruminococcus sp. NK3A76 Saccharomonospora viridis DSM 43017 Salmonella bongori NCTC 12419 Salmonella enterica subsp. arizonae serovar 62:z4,z23:- Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 Sebaldella termitidis ATCC 33386 Sedimentitalea nanhaiensis DSM 24252 Sediminibacter sp. Hel_I_10 Sediminispirochaeta smaragdinae DSM 11293 Selenomonas ruminantium AC2024 Selenomonas sp. AB3002 Shewanella woodyi ATCC 51908 Sinorhizobium medicae WSM1115 Solidesulfovibrio cf. magneticus IFRC170 Solitalea canadensis DSM 3403 Sphaerobacter thermophilus DSM 20745 Sphingomonas melonis C3 Spirochaeta africana DSM 8902 Spirochaeta thermophila DSM 6578 Sporocytophaga myxococcoides DSM 11118 Staphylococcus aureus subsp. aureus USA300_TCH1516 Staphylococcus epidermidis AG42 Staphylothermus marinus F1 Streptobacillus moniliformis DSM 12112 Streptococcus equinus Streptomyces sp. WMMB 714 Streptosporangium roseum DSM 43021 Stutzerimonas stutzeri RCH2 Sulfolobus acidocaldarius DSM 639 Sulfurimonas denitrificans DSM 1251 Sulfurospirillum barnesii SES-3 Syntrophobotulus glycolicus DSM 8271 Syntrophothermus lipocalidus DSM 12680 Teredinibacter purpureus Teredinibacter turnerae Thermacetogenium phaeum DSM 12270 Thermanaerovibrio acidaminovorans DSM 6589 Thermoanaerobacter sp. X514 Thermobacillus composti KWC4 Thermogemmatispora carboxidivorans Thermoplasma acidophilum DSM 1728 Thermoplasma volcanium GSS1 Thermosipho melanesiensis BI429 Thioalkalivibrio sp. ARh3 Thiobacillus denitrificans ATCC 25259 Thiomicrospira pelophila DSM 1534 Thiomonas sp. FB-6 Tolumonas lignilytica Treponema denticola ATCC 35405 Treponema succinifaciens DSM 2489 Veillonella parvula DSM 2008 Verrucomicrobia bacterium LP2A Xanthobacter sp. 91 Xenorhabdus nematophila ATCC 19061 Xylella fastidiosa Temecula1 Zymomonas mobilis subsp. pomaceae ATCC 29192	237	CSV GFF SRA Run Selector	Matthew James Blow	Jan 20, 2016
GSE124246	Surviving climate change – the role of acclimatization in reef-building corals [MethylRAD]	Methylation profiling by high throughput sequencing	Acropora palmata	36	XLSX SRA Run Selector	Iliana B Baums	Dec 05, 2019
GSE83497	Sociality and DNA methylation are not evolutionary dependent	Methylation profiling by high throughput sequencing	Acyrthosiphon pisum Aedes aegypti Aedes albopictus Aedes atropalpus Anastrepha suspensa Anopheles gambiae Aphidius ervi Aphis craccivora Blaptica dubia Blattella asahinai Blattella germanica Chrysodeixis includens Copidosoma floridanum Cryptocercus garciai Culex quinquefasciatus Eublaberus posticus Helicoverpa zea Heliothis virescens Microplitis demolitor Microplitis mediator Pemphigus obesinymphae Pemphigus populicaulis Pemphigus populitransversus Periplaneta americana Polistes carolina Pyractomena borealis Reticulitermes flavipes Reticulitermes virginicus Rhyparobia maderae Toxorhynchites amboinensis	69	TXT SRA Run Selector	Robert J Schmitz	Feb 02, 2017
GSE84589	Cis-regulatory landscape of four cell types of the retina	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Adeno-associated virus Mus musculus synthetic construct	64	TAB SRA Run Selector	Dirk Schuebeler	Oct 25, 2017
GSE140050	Non-canonical base modifications of bacterial origin in a eukaryotic genome [MeDIP-seq]	Methylation profiling by high throughput sequencing	Adineta vaga	4	BED BW SRA Run Selector	Irina Arkhipova	Jan 07, 2022
GSE82063	Comprehensive DNA methylation analysis of the Aedes aegypti genome	Methylation profiling by high throughput sequencing	Aedes aegypti	1	BEDGRAPH SRA Run Selector	Cassandra Falckenhayn	Nov 30, 2017
GSE112636	Diversity of cytosine methylation across the fungi tree of life	Methylation profiling by high throughput sequencing Third-party reanalysis	Agaricus bisporus Aspergillus flavus Aureobasidium pullulans Botrytis cinerea Candida albicans Candidozyma auris Clavispora lusitaniae Coemansia reversa Coemansia spiralis Coprinopsis cinerea Cordyceps militaris Cryptococcus neoformans var. grubii Flammula alnicola Fusarium fujikuroi Hesseltinella vesiculosa Heterobasidion irregulare Kirkomyces cordensis Laccaria bicolor Lobosporangium transversale Metarhizium robertsii Microbotryum lychnidis-dioicae Mixia osmundae Neurospora crassa Parasitella parasitica Phanerodontia chrysosporium Phycomyces blakesleeanus Plenodomus lingam Pleurotus ostreatus Podospora anserina Postia placenta Pseudogymnoascus destructans Pyricularia oryzae KJ201 Radiomyces spectabilis Saccharomyces cerevisiae Spinellus fusiger Sporobolomyces roseus Syncephalis fuscata Tilletiopsis washingtonensis Uncinocarpus reesii Wolfiporia cocos	31	TSV TXT XLS SRA Run Selector	Robert J Schmitz	Feb 18, 2019
GSE81702	The evolution of CHROMOMETHYLTRANSFERASES and gene body DNA methylation in plants	Methylation profiling by high throughput sequencing	Aloe vera Amentotaxus argotaenia Amentotaxus formosana Araucaria Aristolochia grandiflora Celtis occidentalis Cephalotaxus harringtonia Chamaecyparis hodginsii Cissus quadrangularis Cyathea Cyperus papyrus Dacrycarpus compactus Dacrydium balansae Diplazium proliferum Encephalartos horridus Equisetum Gnetum gnemon Hypericum perforatum Impatiens niamniamensis Juniperus virginiana Kalanchoe tomentosa Lupinus angustifolius Manoao colensoi Microsorum punctatum Nepenthes bicalcarata Papuacedrus papuana Pereskia grandiflora Psilotum Selaginella kraussiana Synsepalum dulcificum Thuja sutchuenensis Torreya taxifolia Urtica dioica Yucca brevifolia	150	TXT SRA Run Selector	Robert J Schmitz	Mar 16, 2017
GSE124016	Convergent evolution of a vertebrate-like methylome in a marine sponge	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Amphimedon queenslandica Mnemiopsis leidyi Nematostella vectensis Sycon ciliatum	36	CGMAP TXT SRA Run Selector	Alex de Mendoza	Aug 02, 2019
GSE120401	DNA methylome of pineapple	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Ananas comosus	8	TXT WIG SRA Run Selector	Haifeng Wang	Sep 27, 2018
GSE163905	Transcriptomic analysis of the duckling liver mRNA methylome following infection by the virulent and attenuated Hepatitis A virus type 1 strains	Methylation profiling by high throughput sequencing	Anas platyrhynchos	48	TXT SRA Run Selector	dong chen	Feb 08, 2022
GSE43512	Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates	Methylation profiling by high throughput sequencing	Anolis carolinensis Danio rerio Gallus gallus Homo sapiens Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	24	BED SRA Run Selector	David Sims	Jan 22, 2013
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Postia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE21152	Conservation and divergence of methylation patterning in plants and animals	Methylation profiling by high throughput sequencing	Apis mellifera Arabidopsis thaliana Chlamydomonas reinhardtii Ciona intestinalis Danio rerio Mus musculus Oryza sativa Populus trichocarpa	14	TXT SRA Run Selector	matteo Pellegrini	Apr 09, 2010
GSE29982	Comparative methylomics reveals gene-body H3K36me3 in Drosophila predicts DNA methylation and CpG landscapes in other invertebrates	Methylation profiling by high throughput sequencing	Apis mellifera	1	BED TXT SRA Run Selector	Guillermo Carbajosa	Jun 16, 2011
GSE50990	Intronic Non-CG DNA Hydroxymethylation and Alternative mRNA Splicing in Honey Bees	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Apis mellifera Apis mellifera scutellata	8	BED TXT VCF SRA Run Selector	Pablo Cingolani	Sep 19, 2013
GSE56399	DNA methylation in adult queend and worker bees	Methylation profiling by high throughput sequencing	Apis mellifera	2	TXT SRA Run Selector	Sylvain Foret	Apr 01, 2014
GSE65659	Parallel Epigenomic and Transcriptomic Responses to Viral Infection in Honey Bees (Apis mellifera)	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Apis mellifera	8	TXT SRA Run Selector	David Asher Galbraith	Feb 06, 2015
GSE73545	The evolution of DNA methylation inheritance and programming in animals	Methylation profiling by high throughput sequencing	Apis mellifera Ciona savignyi Nematostella vectensis Strongylocentrotus purpuratus	22	BED SRA Run Selector	jiang liu	Nov 17, 2019