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365 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			SRA Run Selector	Joseph R Ecker
GSE10966	Highly integrated epigenome maps in Arabidopsis - whole genome shotgun bisulfite sequencing	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	TXT SRA Run Selector	Joseph R Ecker	Apr 21, 2008
GSE43857	Patterns of Population Epigenomic Diversity in Arabidopsis thaliana (Methyl-Seq)	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	927	TSV SRA Run Selector	Joseph R Ecker	Mar 05, 2013
GSE79708	Unique cell-type specific patterns of DNA methylation in the root meristem (MethylC-seq)	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	9	TSV SRA Run Selector	Joseph R Ecker	Mar 31, 2016
GSE108401	The Complex Architecture of Transgene Insertions	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	39	BW TSV TXT SRA Run Selector	Joseph R Ecker	Mar 16, 2018
GSE122314	Epigenetic Control of a Multifunctional Stress Regulator	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	126	TSV TXT SRA Run Selector	Joseph R Ecker	Aug 19, 2019
GSE146608	Epigenetic landscape of Mammalian Brain M1 by Single Nucleus Methylation Sequencing [MM_M1]	Methylation profiling by high throughput sequencing	Callithrix jacchus	3047	TSV SRA Run Selector	Joseph R Ecker	Oct 06, 2021
GSE146633	Epigenetic landscape of Mammalian Brain M1 by Single Nucleus Methylation Sequencing [MM_M1_2]	Methylation profiling by high throughput sequencing	Callithrix jacchus	3043	TSV SRA Run Selector	Joseph R Ecker	Oct 06, 2021
GSE241339	Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate motor cortex [marmoset]	Methylation profiling by high throughput sequencing	Callithrix jacchus	5995	TSV SRA Run Selector	Joseph R Ecker	Nov 15, 2023
GSE41753	Single-base resolution DNA methylomes of soybean recombinant inbred lines reveals heritability patterns of natural methylation variants	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Glycine max	97	TSV TXT SRA Run Selector	Joseph R Ecker	Jun 04, 2013
GSE47966	Global epigenomic reconfiguration during mammalian brain development	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	65	BAM TXT SRA Run Selector	Joseph R Ecker	Jul 03, 2013
GSE57179	Epigenetic and transcriptional aberrations in human pluripotent stem cells reflect differences in reprogramming mechanisms	Methylation profiling by high throughput sequencing	Homo sapiens	11	TSV SRA Run Selector	Joseph R Ecker	Jul 02, 2014
GSE79300	Functional Haploid Human Oocytes Generated from Polar Body Genomes (Bisulfite-Seq)	Methylation profiling by high throughput sequencing	Homo sapiens	2	TSV SRA Run Selector	Joseph R Ecker	Dec 07, 2016
GSE82022	Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	18	TAR TSV SRA Run Selector	Joseph R Ecker	Dec 20, 2016
GSE85708	Molecular Criteria for Defining the Naive Human Pluripotent State [methylation profiling]	Methylation profiling by high throughput sequencing	Homo sapiens	12	TSV SRA Run Selector	Joseph R Ecker	Aug 16, 2016
GSE97179	Single Cell Methylome Signatures Reveal Distinct Neuronal Populations and Regulatory Elements in the Mammalian Cortex	Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	6172	TAR SRA Run Selector	Joseph R Ecker	Aug 10, 2017
GSE112471	Robust single-cell DNA methylome profiling with snmC-seq2	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	249	TSV SRA Run Selector	Joseph R Ecker	Sep 20, 2018
GSE124391	Single-cell multi-omic profiling of chromatin conformation and DNA methylome	Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	622	TSV TXT SRA Run Selector	Joseph R Ecker	Dec 26, 2018
GSE130711	Simultaneous profiling of 3D genome structure and DNA methylation in single human cells	Methylation profiling by high throughput sequencing Other	Homo sapiens	4238	TSV TXT SRA Run Selector	Joseph R Ecker	Sep 09, 2019
GSE140493	Multi-omic profiling of single nuclei uncovers regulatory diversity of brain cell types and diseases	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	8494	CSV HDF5 TSV SRA Run Selector	Joseph R Ecker	Dec 12, 2019
GSE146525	Epigenetic landscape of Mammalian Brain M1 by Single Nucleus Methylation Sequencing [M1_1]	Methylation profiling by high throughput sequencing	Homo sapiens	3057	TSV SRA Run Selector	Joseph R Ecker	Oct 06, 2021