GEO Browser - GEO

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57 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			TAB
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE42629	Density and methylation state of CpG dinucleotides define histone variant specific retention of nucleosomes in mouse spermatozoa	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	21	TAB WIG SRA Run Selector	Antoine Peters	Jun 15, 2013
GSE48519	5mC Oxidation by Tet2 Modulates Enhancer Activity and Timing of Transcriptome Reprogramming during Differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	92	BW TAB TXT SRA Run Selector	Gary Chung Hon	Sep 25, 2014
GSE52331	Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	5	TAB	Junjie Guo	Dec 22, 2013
GSE58108	Rlf, a widely-spaced zinc finger protein, is involved in maintaining epigenetic marks at CpG island shores and enhancer elements across the genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	22	BW TAB SRA Run Selector	Harald Oey	Mar 24, 2015
GSE67299	Frequent and Transient Acquisition of Pluripotency During Somatic Cell Trans-Differentiation with iPSCs Reprogramming Factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	15	BED TAB	Noa Novershtern	Apr 30, 2015
GSE68618	Aging-dependent demethylation of regulatory elements correlates with chromatin state and improved insulin secretion by pancreatic β cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	16	TAB TXT SRA Run Selector	Dana Avrahami Tzfati	Sep 01, 2015
GSE76970	Reversion to naïve human pluripotency creates a new methylation landscape devoid of blastocyst or germline memory	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	43	TAB TXT SRA Run Selector	William Abraham Pastor	Feb 04, 2016
GSE84589	Cis-regulatory landscape of four cell types of the retina	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Adeno-associated virus Mus musculus synthetic construct	64	TAB SRA Run Selector	Dirk Schuebeler	Oct 25, 2017
GSE94676	The BLUEPRINT Murine Lymphocyte Epigenome Reference Resource	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	236	BW TAB	Nicolas Walker	Dec 15, 2017
GSE102518	High-Resolution Dissection of Conducive Somatic Cell Reprogramming to Naïve Ground State Pluripotency in Mbd3/NuRD and Gatad2a/NuRD Depleted Systems	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	243	BED TAB TXT	Noa Novershtern	Jul 15, 2018
GSE116704	CG dinucleotides enhance promoter activity independent of DNA methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	186	TAB WIG SRA Run Selector	Dirk Schuebeler	Jan 20, 2019
GSE121459	Myc and Dnmt1 impede the pluripotent to totipotent state transition in embryonic stem cell	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	40	BED CSV TAB	Mohamed Nadhir Djekidel	Apr 12, 2019
GSE125555	Principles of Signalling Pathway Modulation for Enhancing Human Naïve Pluripotency Induction	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	159	BED TAB	Noa Novershtern	Mar 25, 2021
GSE130011	Gene expression, methylome and splicing of THP-1 monocytic cells and THP-1-derived macrophage	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	23	BW TAB TSV TXT XLSX SRA Run Selector	RENHUA SONG	Apr 19, 2019
GSE134452	The histone H3G34R mutation disrupts the epigenome via catalytic inactivation of the ASH1 H3K36 methyltransferase	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Neurospora crassa	20	BIGWIG IGV TAB TDF XLSX	Elizabeth Toomey Wiles	Oct 19, 2022
GSE135037	Hemispheric asymmetry in the human brain and in Parkinson’s disease is linked to divergent epigenetic patterns in neurons	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	279	TAB TXT	Peipei Li	Feb 12, 2020
GSE144524	High throughput screening identifies SOX2 as a Super Pioneer Factor that inhibits DNA methylation maintenance at its binding sites	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	24	TAB TXT SRA Run Selector	victor YTHIER	Mar 18, 2021
GSE148753	RNA interference-independent reprogramming of DNA methylation in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	72	TAB TXT SRA Run Selector	Taiko Kim To	Sep 30, 2020
GSE150527	Comprehensive epigenomic profiling of human alveolar epithelial differentiation identifies key epigenetic states and transcription factor co-regulatory networks for maintenance of distal lung identity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	48	BIGWIG BW RDS TAB WIG SRA Run Selector	Crystal N Marconett	Oct 27, 2021