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2574 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			TXT
GSE245492	Phenotypic plasticity for improved light harvesting, in tandem with methylome repatterning in reef-building corals [Methyl-seq]	Methylation profiling by high throughput sequencing	Acropora palmata	32	COV TXT XLSX	KELLY Johanna GOMEZ-CAMPO	Jan 01, 2024
GSE245494	Phenotypic plasticity for improved light harvesting, in tandem with methylome repatterning in reef-building corals	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Acropora palmata	62	COV TXT	KELLY Johanna GOMEZ-CAMPO	Jan 01, 2024
GSE83497	Sociality and DNA methylation are not evolutionary dependent	Methylation profiling by high throughput sequencing	Acyrthosiphon pisum Aedes aegypti Aedes albopictus Aedes atropalpus Anastrepha suspensa Anopheles gambiae Aphidius ervi Aphis craccivora Blaptica dubia Blattella asahinai Blattella germanica Chrysodeixis includens Copidosoma floridanum Cryptocercus garciai Culex quinquefasciatus Eublaberus posticus Helicoverpa zea Heliothis virescens Microplitis demolitor Microplitis mediator Pemphigus obesinymphae Pemphigus populicaulis Pemphigus populitransversus Periplaneta americana Polistes carolina Pyractomena borealis Reticulitermes flavipes Reticulitermes virginicus Rhyparobia maderae Toxorhynchites amboinensis	69	TXT SRA Run Selector	Robert J Schmitz	Feb 02, 2017
GSE112636	Diversity of cytosine methylation across the fungi tree of life	Methylation profiling by high throughput sequencing Third-party reanalysis	Agaricus bisporus Aspergillus flavus Aureobasidium pullulans Botrytis cinerea Candida albicans Candidozyma auris Clavispora lusitaniae Coemansia reversa Coemansia spiralis Coprinopsis cinerea Cordyceps militaris Cryptococcus neoformans var. grubii Flammula alnicola Fusarium fujikuroi Hesseltinella vesiculosa Heterobasidion irregulare Kirkomyces cordensis Laccaria bicolor Lobosporangium transversale Metarhizium robertsii Microbotryum lychnidis-dioicae Mixia osmundae Neurospora crassa Parasitella parasitica Phanerodontia chrysosporium Phycomyces blakesleeanus Plenodomus lingam Pleurotus ostreatus Podospora anserina Postia placenta Pseudogymnoascus destructans Pyricularia oryzae KJ201 Radiomyces spectabilis Saccharomyces cerevisiae Spinellus fusiger Sporobolomyces roseus Syncephalis fuscata Tilletiopsis washingtonensis Uncinocarpus reesii Wolfiporia cocos	31	TSV TXT XLS SRA Run Selector	Robert J Schmitz	Feb 18, 2019
GSE81702	The evolution of CHROMOMETHYLTRANSFERASES and gene body DNA methylation in plants	Methylation profiling by high throughput sequencing	Aloe vera Amentotaxus argotaenia Amentotaxus formosana Araucaria Aristolochia grandiflora Celtis occidentalis Cephalotaxus harringtonia Chamaecyparis hodginsii Cissus quadrangularis Cyathea Cyperus papyrus Dacrycarpus compactus Dacrydium balansae Diplazium proliferum Encephalartos horridus Equisetum Gnetum gnemon Hypericum perforatum Impatiens niamniamensis Juniperus virginiana Kalanchoe tomentosa Lupinus angustifolius Manoao colensoi Microsorum punctatum Nepenthes bicalcarata Papuacedrus papuana Pereskia grandiflora Psilotum Selaginella kraussiana Synsepalum dulcificum Thuja sutchuenensis Torreya taxifolia Urtica dioica Yucca brevifolia	150	TXT SRA Run Selector	Robert J Schmitz	Mar 16, 2017
GSE249241	DNA methylation enables recurrent endogenisation of giant viruses in an animal relative	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Amoebidium appalachense Amoebidium parasiticum Creolimax fragrantissima Ichthyosporea sp. XGB-2017a Sphaeroforma arctica	50	CGMAP TSV TXT	Alex de Mendoza	Jul 15, 2024
GSE124016	Convergent evolution of a vertebrate-like methylome in a marine sponge	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Amphimedon queenslandica Mnemiopsis leidyi Nematostella vectensis Sycon ciliatum	36	CGMAP TXT SRA Run Selector	Alex de Mendoza	Aug 02, 2019
GSE120401	DNA methylome of pineapple	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Ananas comosus	8	TXT WIG SRA Run Selector	Haifeng Wang	Sep 27, 2018
GSE163905	Transcriptomic analysis of the duckling liver mRNA methylome following infection by the virulent and attenuated Hepatitis A virus type 1 strains	Methylation profiling by high throughput sequencing	Anas platyrhynchos	48	TXT SRA Run Selector	dong chen	Feb 08, 2022
GSE218877	5-methyl cytosine profile of Anthoceros agrestis	Methylation profiling by high throughput sequencing	Anthoceros agrestis	2	BEDGRAPH TXT	Tetsuya Hisanaga	Nov 10, 2023
GSE218880	5-methyl cytosine profile and chromatin profile of Anthoceros agrestis	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anthoceros agrestis	20	BEDGRAPH BROADPEAK BW TXT	Tetsuya Hisanaga	Nov 10, 2023
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Postia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE21152	Conservation and divergence of methylation patterning in plants and animals	Methylation profiling by high throughput sequencing	Apis mellifera Arabidopsis thaliana Chlamydomonas reinhardtii Ciona intestinalis Danio rerio Mus musculus Oryza sativa Populus trichocarpa	14	TXT SRA Run Selector	matteo Pellegrini	Apr 09, 2010
GSE29982	Comparative methylomics reveals gene-body H3K36me3 in Drosophila predicts DNA methylation and CpG landscapes in other invertebrates	Methylation profiling by high throughput sequencing	Apis mellifera	1	BED TXT SRA Run Selector	Guillermo Carbajosa	Jun 16, 2011
GSE50990	Intronic Non-CG DNA Hydroxymethylation and Alternative mRNA Splicing in Honey Bees	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Apis mellifera Apis mellifera scutellata	8	BED TXT VCF SRA Run Selector	Pablo Cingolani	Sep 19, 2013
GSE56399	DNA methylation in adult queend and worker bees	Methylation profiling by high throughput sequencing	Apis mellifera	2	TXT SRA Run Selector	Sylvain Foret	Apr 01, 2014
GSE65659	Parallel Epigenomic and Transcriptomic Responses to Viral Infection in Honey Bees (Apis mellifera)	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Apis mellifera	8	TXT SRA Run Selector	David Asher Galbraith	Feb 06, 2015
GSE116629	DNA methylation is maintained with high fidelity in the honey bee germline and exhibits global non-functional fluctuations during somatic development	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Apis mellifera	29	GFF TXT SRA Run Selector	Assaf Zemach	Oct 01, 2019
GSE137000	m6A methylome analysis reveals that m6A marks function in larval development and caste differentiation in honeybee (Apis mellifera)	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Apis mellifera	20	TXT SRA Run Selector	Yan Li	Dec 13, 2020
GSE54727	Genome-wide profiling of H3K4me3, H3K27me3 H3K27me1 and 5mC enrichment and mRNA levels in young leaves of Arabidopsis lyrata	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis lyrata	12	BED BEDGRAPH TXT SRA Run Selector	François ROUDIER	Feb 03, 2015