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25 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			VCF
GSE118716	Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine resistant breast cancer	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	40	BB BW HIC TXT VCF	Joanna Achinger-Kawecka	Dec 11, 2019
GSE50990	Intronic Non-CG DNA Hydroxymethylation and Alternative mRNA Splicing in Honey Bees	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Apis mellifera Apis mellifera scutellata	8	BED TXT VCF SRA Run Selector	Pablo Cingolani	Sep 19, 2013
GSE161676	Identifying non-genetic determinants of malignant clonal fitness at single cell resolution	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus synthetic construct	271	BED MTX SEG TSV VCF	Mark Dawson	Nov 08, 2021
GSE217482	Immunoediting instructs tumor metabolic reprogramming to support immune evasion	Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	45	BED BIGWIG TXT VCF	Ping-Chih Ho	Nov 15, 2022
GSE245771	Differential DNA methylation occurs in RUNX1 heterozygous mutations harboring hematopoietic progenitor cells	Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Other	Homo sapiens	19	BED TXT VCF	Yuki Tanaka	Feb 26, 2024
GSE79148	Mechanisms and disease associations of haplotype-dependent allele specific DNA methylation: Methyl-seq data for the identification of hap-ASM	Methylation profiling by high throughput sequencing	Homo sapiens	13	BEDGRAPH VCF SRA Run Selector	Benjamin Tycko	Mar 21, 2016
GSE79262	Mechanisms and disease associations of haplotype-dependent allele specific DNA methylation	Methylation profiling by genome tiling array Genome variation profiling by SNP array Methylation profiling by high throughput sequencing	Homo sapiens	326	BEDGRAPH IDAT VCF	Benjamin Tycko	Mar 21, 2016
GSE148185	Three-dimensional chromatin interactions remain stable upon CAG/CTG repeat expansion	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	275	BEDGRAPH BIGWIG TXT VCF	Gustavo Agustín Ruiz Buendía	Apr 07, 2020
GSE197130	Allele-specific aberration of imprinted domain chromosome architecture associates with large offspring syndrome	Other Genome variation profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Bos indicus Bos indicus x Bos taurus	50	BEDGRAPH VCF	Rocío Melissa Rivera	Apr 22, 2022
GSE208549	Accurate simultaneous sequencing of genetic and epigenetic bases in DNA	Methylation profiling by high throughput sequencing Other	Homo sapiens	7	BEDGRAPH CSV TSV VCF	Páidí Creed	Jul 24, 2022
GSE208759	DNA methyltransferases are complementary in maintaining DNA methylation in embryonic stem cells	Methylation profiling by high throughput sequencing Other	Mus musculus	11	BEDGRAPH VCF	zhen Xu	Oct 21, 2022
GSE152639	Structure of DNA methyltransferases DNMT3A/DNMT3B bound to a nucleosome [seq]	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	synthetic construct	20	BW FA VCF SRA Run Selector	Peter A Jones	Jun 17, 2020
GSE152640	Structure of DNA methyltransferases DNMT3A/DNMT3B bound to a nucleosome	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens synthetic construct	36	BW IDAT VCF	Peter A Jones	Jun 17, 2020
GSE158011	DNA methylation maintains integrity of higher order genome architecture	Other Methylation profiling by high throughput sequencing	Homo sapiens	46	BW VCF	Qian Du	Sep 21, 2021
GSE238136	The genomes and epigenomes of aquatic plants (Lemnaceae) promote triploid hybridization and clonal reproduction	Methylation profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Lemna gibba Lemna japonica Lemna minor Lemna turionifera Spirodela polyrhiza Wolffia australiana	42	BW HIC VCF	Robert A Martienssen	Dec 12, 2023
GSE242475	DNA methylome, R-loop and clinical exome profiling of patients with sporadic Amyotrophic Lateral Sclerosis	Methylation profiling by high throughput sequencing Other	Homo sapiens	28	BW TXT VCF	Lorant Szekvolgyi	Dec 31, 2023
GSE245426	A maternal-effect Padi6 variant causes nuclear and cytoplasmic abnormalities in oocytes as well 2 as failure of epigenetic reprogramming and zygotic genome activation in embryos	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	193	COV VCF	Francesco Cecere	Oct 18, 2023
GSE98911	Nucleosome Positioning by an Evolutionarily Conserved Chromatin Remodeler Prevents Aberrant DNA Methylation in Neurospora.	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Neurospora crassa	19	FASTA IGV TDF TXT VCF WIG SRA Run Selector	Andrew David Klocko	Jan 16, 2019
GSE103939	DNA methylation profiling of Daphnia species.	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Daphnia magna Daphnia pulex	41	TXT VCF SRA Run Selector	Jouni Antero Kvist	Dec 11, 2018
GSE165391	Glioblastoma cells acquire myeloid-affiliated transcriptional programs via epigenetic immunoediting to elicit immune evasion	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	63	TXT VCF	Ben Southgate	Apr 30, 2021