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331 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing			WIG
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE30558	Bisulphite-sequencing of chromatin immunoprecipitated DNA (BisChiP-seq) directly informs methylation status	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	2	BAM BED CSV WIG SRA Run Selector	Mark Robinson	Jan 18, 2012
GSE81436	The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	17	BAM BW CSV GFF WIG XLS SRA Run Selector	chao zhou	Jun 13, 2016
GSE28254	Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	15	BED WIG SRA Run Selector	Arjen Brinkman	Mar 27, 2012
GSE30902	Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 lysine 36	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	4	BED WIG SRA Run Selector	Romain Fenouil	Jul 25, 2011
GSE31204	Epigenetic remodeling and deregulation of SAPAP4/DLGAP4 is linked with early-onset cerebellar ataxia	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	15	BED BEDGRAPH WIG SRA Run Selector	Sheroy Minocherhomji	Jul 01, 2014
GSE31353	Methylation map of 8 neuroblastoma cell lines: NGS after MBD2-capture	Methylation profiling by high throughput sequencing	Homo sapiens	8	BED WIG SRA Run Selector	Maté Ongenaert	Sep 13, 2012
GSE31355	A genome wide methylation map of neuroblastoma cell lines	Methylation profiling by high throughput sequencing Expression profiling by array	Homo sapiens	24	BED CEL WIG	Maté Ongenaert	Sep 13, 2012
GSE34267	Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	12	BED CEL WIG	Raja Jothi	Jan 04, 2012
GSE34403	Bisulphite-sequencing of chromatin immunoprecipitated DNA directly informs methylation status of histone-modified DNA	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	8	BED CSV WIG	Mark Robinson	Jan 18, 2012
GSE34887	Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity [MRE-seq]	Methylation profiling by high throughput sequencing	Mus musculus	4	BED WIG SRA Run Selector	Raja Jothi	Jan 06, 2012
GSE35405	Sequence and expression analysis of human chromosome 20 gaps	Other Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	7	BED WIG SRA Run Selector	Sheroy Minocherhomji	Apr 17, 2012
GSE39068	Comparative genome-wide DNA methylation analysis of colorectal tumor and matched normal tissues	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	68	BED TXT WIG SRA Run Selector	Arjen Brinkman	Oct 26, 2012
GSE43094	Direct ChIP-bisulfite sequencing reveals a role of H3K27me3 mediating aberrant hypermethylation of promoter CpG islands in cancer cells (ChIP-BS)	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	13	BED TXT WIG SRA Run Selector	Desheng Gong	Jul 01, 2014
GSE43096	Direct ChIP-bisulfite sequencing reveals a role of H3K27me3 mediating aberrant hypermethylation of promoter CpG islands in cancer cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	16	BED TXT WIG	Desheng Gong	Jul 01, 2014
GSE47793	The DNA methylome of Epiblast Stem Cells and Embryonic Stem Cells is distinct and not fully reversible	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	6	BED WIG SRA Run Selector	Hendrik Marks	Apr 28, 2014
GSE49546	RRHP : a tag-based approach for 5-hydroxymethylcytosine mapping at single-site resolution	Methylation profiling by high throughput sequencing	Homo sapiens	10	BED TXT WIG SRA Run Selector	Xueguang Sun	Aug 26, 2014
GSE50935	Genome wide effects of maternal undernutrition	Methylation profiling by high throughput sequencing	Rattus norvegicus	3	BED WIG SRA Run Selector	Gioia Altobelli	May 20, 2014
GSE52590	Heterogeneous DNA methylation changes in acute myeloid leukemia associate with cancer-specific gene expression signatures and disruption of the hematopoietic regulatory network	Methylation profiling by high throughput sequencing	Homo sapiens	20	BED TXT WIG SRA Run Selector	Arjen Brinkman	May 01, 2018