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489 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Mus musculus		BED
GSE14254	Global Mapping of Histone H3 K4 and K27 Trimethylation: Lineage Fate Determination of Differentiating CD4+ T Cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED SRA Run Selector	Weiqun Peng	Jan 21, 2009
GSE17642	Genome-wide mapping of Eset-binding sites and H3K9me3 state in mouse embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	3	BED TXT SRA Run Selector	Mikael Huss	Nov 04, 2009
GSE20898	Genome-wide Analyses of Transcription Factor GATA3-Mediated Gene Regulation in Distinct T Cell Types	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	53	BED BEDGRAPH RPKM SRA Run Selector	Brian J Abraham	Aug 26, 2011
GSE21242	Chromatin and Sequence Features that Define the Fine and Gross Structure of Genomics Methylation Patterns	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	8	BED TXT SRA Run Selector	John R. Edwards	Apr 16, 2010
GSE24841	Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity (ChIP/DIP-Seq data)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	17	BED SRA Run Selector	Kristine Williams	Apr 13, 2011
GSE24843	Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by array	Mus musculus	32	BED CEL	Kristine Williams	Apr 13, 2011
GSE25898	Paternally-induced transgenerational environmental reprogramming of metabolic gene expression in mammals (meDIP)	Methylation profiling by high throughput sequencing	Mus musculus	4	BED SRA Run Selector	naomi habib	Jan 14, 2011
GSE27322	de novo DNA Methylation Balances Hematopoietic Stem Cell Self-Renewal and Differentiation	Methylation profiling by high throughput sequencing Expression profiling by array	Mus musculus	10	BAM BED CEL SRA Run Selector	deqiang sun	Sep 30, 2011
GSE28254	Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	15	BED WIG SRA Run Selector	Arjen Brinkman	Mar 27, 2012
GSE28500	Genome-wide Regulation of 5hmC, 5mC and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	23	BED CEL	Feizhen Wu	Apr 21, 2011
GSE28532	Genome-wide Regulation of 5hmC, 5mC and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells (ChIP-seq data)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	14	BED SRA Run Selector	Feizhen Wu	Apr 21, 2011
GSE28533	Genome-wide Regulation of 5hmC, 5mC and Gene Expression by Tet1 Hydroxylase in Mouse Embryonic Stem Cells (bisulfite sequencing data)	Methylation profiling by high throughput sequencing	Mus musculus	4	BED TXT SRA Run Selector	Feizhen Wu	Apr 21, 2011
GSE28682	Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells	Methylation profiling by high throughput sequencing Other	Mus musculus	9	BED SRA Run Selector	William Abraham Pastor	Apr 21, 2011
GSE30199	Base-resolution analyses of parent-of-origin and sequence dependent allele specific DNA methylation in the mouse genome (ChIP-seq and Methyl-seq)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	10	BAM BED TXT SRA Run Selector	Wei Xie	Feb 15, 2012
GSE31343	5-hydroxymethylcytosine: the sixth DNA base	Methylation profiling by high throughput sequencing	Mus musculus	5	BED SRA Run Selector	H.G. Stunnenberg	Nov 24, 2011
GSE32484	DNA methylation of dnmt3a deficient Kras lung tumors and dnmt3a wt Kras lung tumors	Methylation profiling by high throughput sequencing	Mus musculus	5	BED TXT SRA Run Selector	Qing Gao	Oct 26, 2011
GSE32487	Gene expression and DNA methylation of lung tumors in Dnmt3a deficient vs. WT mice	Methylation profiling by high throughput sequencing Expression profiling by array	Mus musculus	17	BED TXT	Qing Gao	Oct 26, 2011
GSE33722	Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BAM BED TXT	Wei Xie	Feb 15, 2012
GSE33781	Genome-wide maps of 5hmC state in pluripotent and (T-)iPS induction cells.	Methylation profiling by high throughput sequencing	Mus musculus	5	BED SRA Run Selector	Tao Cai	Nov 17, 2012
GSE34267	Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity	Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	12	BED CEL WIG	Raja Jothi	Jan 04, 2012