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421 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Arabidopsis thaliana
GSE155367	Epigenetic reprogramming events rewire transcription during the alternation of generations in Arabidopsis [DNA methylation]	Methylation profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana		BED BW XLSX	Michael Borg	Jan 26, 2021
GSE155369	Epigenetic reprogramming rewires transcription during the alternation of generations in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	19	TSV	Michael Borg	Jan 26, 2021
GSE106112	microRNA-triggered transposon small RNAs mediate genome dosage response (Bisulfite-Seq)	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	8	WIG SRA Run Selector	Filipe Borges	Dec 31, 2017
GSE106117	microRNA-triggered transposon small RNAs mediate genome dosage response	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	24	TXT WIG	Filipe Borges	Dec 31, 2017
GSE117316	Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	7	WIG SRA Run Selector	Filipe Borges	Dec 03, 2020
GSE117318	Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	19	TXT WIG	Filipe Borges	Dec 03, 2020
GSE152584	Epigenetic differences between transgenes and endogenous genes promote transgene silencing in plants	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	7	WIG SRA Run Selector	Filipe Borges	Mar 25, 2021
GSE157670	Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	1	WIG SRA Run Selector	Filipe Borges	Dec 03, 2020
GSE179702	Chemically-induced epimutagenesis allows bypassing reproductive barriers in hybrid seeds [BiSulfite-seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	14	WIG SRA Run Selector	Filipe Borges	Nov 23, 2021
GSE179704	Chemically-induced epimutagenesis allows bypassing reproductive barriers in hybrid seeds	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	28	TXT WIG	Filipe Borges	Nov 23, 2021
GSE231667	Targeted suppression of siRNA biogenesis in Arabidopsis pollen [bisulfite-seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	9	WIG	Filipe Borges	May 07, 2023
GSE231670	Targeted suppression of siRNA biogenesis in Arabidopsis pollen	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	29	TXT WIG	Filipe Borges	May 07, 2023
GSE85975	DNA methylation dynamics during early plant life	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	5	BEDGRAPH GFF SRA Run Selector	Daniel Bouyer	Aug 23, 2017
GSE141154	Male fertility in plants requires active DNA demethylation of genes that control pollen tube funcion	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	8	TXT WIG SRA Run Selector	Daniel Bouyer	Nov 05, 2020
GSE99396	Inhibition of RNA polymerase II allows controlled mobilisation of retrotransposons for plant breeding [Arabidopsis]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	TXT SRA Run Selector	Etienne Bucher	Jun 26, 2017
GSE80050	Transcriptome-wide RNA 5-methylcytosine methylation in siliques of Arabidopsis thaliana	Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	5	SRA Run Selector	Alice Louise Burgess	Apr 07, 2017
GSE80051	Transcriptome-wide RNA 5-methylcytosine methylation in shoots of Arabidopsis thaliana	Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	6	SRA Run Selector	Alice Louise Burgess	Apr 07, 2017
GSE80052	Transcriptome-wide RNA 5-methylcytosine methylation in roots of Arabidopsis thaliana	Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	6	SRA Run Selector	Alice Louise Burgess	Apr 07, 2017
GSE80054	Transcriptome-wide RNA 5-methylcytosine methylation in siliques, shoots and roots and root gene expression profiling of Arabidopsis thaliana	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	29	XLS XLSX	Alice Louise Burgess	Apr 07, 2017
GSE231564	Chromatin remodeling of histone H3 variants by DDM1 underlies epigenetic inheritance of DNA methylation [bisulfite-seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16	BW	Jonathan Cahn	Nov 27, 2023