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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Arabidopsis thaliana			CSV
GSE72770	Whole Genome Bisulfite sequencing of Arabidopsis thaliana High and Low phosphate methylomes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16		CSV TXT SRA Run Selector	Luis Rafael Herrera Estrella	Dec 31, 2015
GSE85551	sRNA drives epigenetic changes in F1 hybrids	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	38		CSV TXT WIG SRA Run Selector	Ian K Greaves	Aug 30, 2016
GSE156570	TMK4-mediated Phosphorylation of FIP37 Regulates Auxin-triggered N6-methyladenosine mRNA Modification of Auxin Biosynthetic Genes in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	32		BW CSV TXT XLSX SRA Run Selector	Chongsheng He	Jul 18, 2024
GSE163271	Long-lasting memory of jasmonic acid-dependent immunity requires DNA demethylation and ARGONAUTE1	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	36		CSV TSV TXT	Jurriaan Ton	Nov 07, 2022
GSE148173	Noncoding RNA-mediated DNA methylation directs nucleosome positioning	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	20		BED CSV SRA Run Selector	Shriya Sethuraman	Apr 06, 2023
GSE65685	Population epigenomics of Swedish Arabidopsis	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	113		CSV SRA Run Selector	Manu Dubin	Mar 28, 2015
GSE68860	Genome-wide single-molecule sequencing of 6-methyladenine in eukaryotes	Methylation profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana Auricularia delicata Caenorhabditis elegans Chlamydomonas reinhardtii Drosophila melanogaster Nannochloropsis oceanica Saccharomyces cerevisiae	11		BW CSV GFF SRA Run Selector	Denis Tolkunov	Sep 01, 2017
GSE119259	Genome-wide bisulfite sequencing of methylation from seedings of of two light grown Arabidopsis thaliana CSN mutants and two wild type ecotypes	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4		CSV SRA Run Selector	Tamir Tuller	Jul 28, 2020
GSE155853	Methylome of galls formed by Meloidogyne javanica in Arabidopsis thaliana at 3 days post infection	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	6		CSV SRA Run Selector	Carolina Escobar	Jul 31, 2022
GSE156025	Methylome of galls formed by Meloidogyne javanica in Arabidopsis thaliana at 14 days post infection	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	6		CSV SRA Run Selector	Carolina Escobar	Jul 31, 2022
GSE173190	Bisulfte sequnencing of Wild Type (Col-0), and miP1aOX in Arabidopsis thaliana	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	2		BIGWIG CSV SRA Run Selector	Bin Sun	Apr 24, 2021
GSE192606	Function of ARGONAUTE proteins in the Arabidopsis shoot apical meristem (SAM) [Bisulfite-Seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	24		CSV	Ruben Gutzat	Sep 30, 2023
GSE241248	Serrate modulates N6-Methyladenosine (m6A) RNA modification in Arabidopsis	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	8		CSV	Chi Zhang	Nov 01, 2023