GEO Browser - GEO

Series

Samples

Platforms

DataSets

270 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Arabidopsis thaliana		SRA Run Selector
GSE37644	MORC family ATPases required for heterochromatin condensation and gene silencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	26	TXT WIG SRA Run Selector	Shawn J. Cokus	May 03, 2012
GSE38286	DNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis.	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	43	TXT SRA Run Selector	Hume Stroud	Aug 07, 2012
GSE39045	Deposition of histone variant H2A.Z within gene bodies regulates responsive genes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	38	GFF SRA Run Selector	Toshiro Nishimura	Dec 13, 2012
GSE39247	The DDR complex facilitates the genome-wide association of RNA Polymerase V to promoters and evolutionarily young transposons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	11	WIG SRA Run Selector	Christopher Joel Hale	Aug 05, 2012
GSE39901	Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome.	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	92	WIG SRA Run Selector	Hume Stroud	Jan 11, 2013
GSE41302	DDM1 and RdDM are the major regulators of transposon DNA methylation in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	33	GFF SRA Run Selector	Toshiro Nishimura	Apr 17, 2013
GSE48026	mRNA-Seq of asi1-1, wild-type and MethlyC-Seq of asi1-1	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	3	BEDGRAPH WIG SRA Run Selector	Jian-Kang Zhu	Sep 06, 2013
GSE49090	Interplay Between Active Chromatin Marks and RNA-directed DNA Methylation in Arabidopsis thaliana	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	34	WIG SRA Run Selector	Christopher Joel Hale	Nov 01, 2013
GSE50486	rrp6l1-2 project	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	5	BEDGRAPH WIG SRA Run Selector	Jian-Kang Zhu	Apr 16, 2014
GSE50942	The Histone Variant H2A.W Defines Heterochromatin and Promotes Chromatin Condensation in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	TXT WIG SRA Run Selector	Hume Stroud	Jul 05, 2014
GSE51304	Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	48	TXT WIG SRA Run Selector	Hume Stroud	Dec 15, 2013
GSE53642	DNA hypomethylation bypasses the interploidy hybridization barrier in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	22	TXT SRA Run Selector	Juan C Santos-González	Sep 22, 2014
GSE54677	Transcriptional gene silencing by Arabidopsis Microrchidia homologues involves the formation of heteromers	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	24	WIG SRA Run Selector	Christopher Joel Hale	Jun 01, 2014
GSE61439	Pol-IV dependent transcripts in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Arabidopsis thaliana	42	PDF TXT WIG XLSX SRA Run Selector	Steve Jacobsen	Sep 13, 2015
GSE64600	SUVH1, a histone methyltransferase, is required for the expression of genes targeted by DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	6	WIG SRA Run Selector	shaofang Li	Feb 09, 2017
GSE67813	XCT is a novel regulator of chromatin functionally conserved across eukaryotes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	18	GFF TSV SRA Run Selector	Stacey Harmer	May 01, 2019
GSE72770	Whole Genome Bisulfite sequencing of Arabidopsis thaliana High and Low phosphate methylomes	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16	CSV TXT SRA Run Selector	Luis Rafael Herrera Estrella	Dec 31, 2015
GSE72993	Methylation interactions in Arabidopsis hybrids require RNA-directed DNA methylation and are influenced by genetic variation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16	WIG SRA Run Selector	Yanqiang Li	Jun 15, 2016
GSE74551	The chromatin remodeler protein DDM1 regulates early seedling growth hybrid vigor by modulating gene expression in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	28	TXT WIG SRA Run Selector	Yanqiang Li	Nov 07, 2016
GSE75071	On the Origin and Evolutionary Consequences of Gene Body DNA Methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Third-party reanalysis	Arabidopsis lyrata Arabidopsis thaliana Brassica oleracea Brassica rapa Capsella rubella Eutrema salsugineum	44	BED TSV SRA Run Selector	Robert J Schmitz	Jul 11, 2016