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179 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Arabidopsis thaliana		TXT
GSE10877	Highly integrated single base resolution maps of the epigenome in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Methylation profiling by array Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16	CEL TXT	Joseph R Ecker	Apr 21, 2008
GSE10966	Highly integrated epigenome maps in Arabidopsis - whole genome shotgun bisulfite sequencing	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	TXT SRA Run Selector	Joseph R Ecker	Apr 21, 2008
GSE14570	Extensive demethylation of repetitive elements during seed development underlies gene imprinting	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	BEDGRAPH GFF PAIR TXT SRA Run Selector	Jorja Henikoff	Jun 12, 2009
GSE15922	Genome-wide demethylation of Arabidopsis endosperm	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	GFF TXT SRA Run Selector	Toshiro Nishimura	Jun 16, 2009
GSE21152	Conservation and divergence of methylation patterning in plants and animals	Methylation profiling by high throughput sequencing	Apis mellifera Arabidopsis thaliana Chlamydomonas reinhardtii Ciona intestinalis Danio rerio Mus musculus Oryza sativa Populus trichocarpa	14	TXT SRA Run Selector	matteo Pellegrini	Apr 09, 2010
GSE21673	Relationship between nucleosome positioning and DNA methylation	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Arabidopsis thaliana Homo sapiens	6	CEL TXT	matteo Pellegrini	May 29, 2010
GSE21821	Relationship between nucleosome positioning and DNA methylation: Bisulfite-Seq, ChIP-Seq, and Mnase-Seq	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Homo sapiens	4	TXT SRA Run Selector	matteo Pellegrini	May 29, 2010
GSE35542	Trans Chromosomal Methylation in Arabidopsis hybrids	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	BSP TXT SRA Run Selector	Jennifer Taylor	Feb 05, 2012
GSE36143	An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis [BS-seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	5	TXT SRA Run Selector	Christopher Joel Hale	May 26, 2012
GSE36148	An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	18	TXT	Christopher Joel Hale	May 26, 2012
GSE36783	High-throughput Illumina sequencing of bisulfite transformed genomic DNA from Arabidopsis thaliana wild-type, msh1 mutant and MSH1-epiF3 lines	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	6	TXT SRA Run Selector	Ying-Zhi Xu	Jan 01, 2014
GSE36845	Selection of epigenetic variation in Arabidopsis [Bisulfite-Seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	8	TXT SRA Run Selector	Christian Heichinger	Sep 01, 2014
GSE36846	Selection of epigenetic variation in Arabidopsis	Methylation profiling by high throughput sequencing Expression profiling by array Genome variation profiling by high throughput sequencing	Arabidopsis thaliana	33	CEL TXT	Christian Heichinger	Sep 01, 2014
GSE37644	MORC family ATPases required for heterochromatin condensation and gene silencing	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	26	TXT WIG SRA Run Selector	Shawn J. Cokus	May 03, 2012
GSE38286	DNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis.	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	43	TXT SRA Run Selector	Hume Stroud	Aug 07, 2012
GSE38991	Genome-wide DNA methylation maps of Arabidopsis thaliana in two seasons	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	TXT SRA Run Selector	Yu-Xian Zhu	Jul 21, 2013
GSE46428	High-throughput sequencing of methylated cytosine enriched by modification-dependent restriction endonuclease MspJI	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	2	GFF TXT SRA Run Selector	Desheng Gong	May 01, 2013
GSE47453	Bisulfite-Seq profiling of wild-type Arabidopsis with two-component transgene silencing (T+S) system	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	1	TXT SRA Run Selector	Pao-Yang Chen	May 30, 2013
GSE50691	DNA Topoisomerase 1α Promotes RNA-directed DNA Methylation and Histone Lysine 9 Dimethylation at Transposable Elements in Arabidopsis [Bisulfite-Seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	TXT SRA Run Selector	Lei Gao	Jul 07, 2014
GSE50720	DNA Topoisomerase 1α Promotes RNA-directed DNA Methylation and Histone Lysine 9 Dimethylation at Transposable Elements in Arabidopsis	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	15	TXT	Lei Gao	Jul 08, 2014