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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Arabidopsis thaliana			XLSX
GSE156570	TMK4-mediated Phosphorylation of FIP37 Regulates Auxin-triggered N6-methyladenosine mRNA Modification of Auxin Biosynthetic Genes in Arabidopsis	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	32		BW CSV TXT XLSX SRA Run Selector	Chongsheng He	Jul 18, 2024
GSE228425	Promiscuous CRE-CRE interaction that acts as a causative force driving de novel methylation in cis-regulatory elements in plants [AGeRdDM BSseq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	5		XLSX	Zongrang Liu	Sep 21, 2023
GSE228513	A novel anti-RdDM element that defends cis-regulatory element against ncRNA-dependent, siRNA-driven, and methylation-imposed transcriptional silencing in plants [ARE BSseq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	51		XLSX	Zongrang Liu	Sep 21, 2023
GSE153159	Histone methyltransferases SDG25/ATX1 regulate heat stress memory by antagonizing DNA remethylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	28		TXT XLSX SRA Run Selector	Ze-Ting Song	Jun 24, 2021
GSE155367	Epigenetic reprogramming events rewire transcription during the alternation of generations in Arabidopsis [DNA methylation]	Methylation profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana			BED BW XLSX	Michael Borg	Jan 26, 2021
GSE132944	Regulation of plant DNA methylation by UV-B light in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16		BW XLSX SRA Run Selector	Xuehua Zhong	Dec 04, 2020
GSE86447	RTEL1 modulates H3 occupancy in heterochromatic regions and acts synergistically with MET1/DDM1 to maintain genome integrity	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	20		BED TXT XLSX SRA Run Selector	Jinkui Cheng	Sep 06, 2019
GSE117418	Next Generation Sequencing Facilitates Quantitative Analysis of mock and tobacco ratle virus (TRV) Arabidopsis inflorescences Methylome. [MethylC-seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	2		TXT XLS XLSX SRA Run Selector	Virginia Ruiz-Ferrer	Dec 01, 2018
GSE103924	Topoisomerase VI participates to a chromatin barrier-like function that prevents heterochromatin spreading in euchromatic islands (HTS)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	28		BIGWIG BW XLSX SRA Run Selector	Christophe Laloi	Sep 12, 2018
GSE84014	Mutation of S-adenosyl-methionine synthetase 3 (SAMS3) releases transcriptional silencing by reducing DNA and histone methylation in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	6		BEDGRAPH XLSX SRA Run Selector	Jinkui Cheng	Jun 21, 2018
GSE79676	Bisulfite-Seq and RNA-seq profiling of Arabidopsis aneuploids	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	53		DIFF TXT XLSX SRA Run Selector	Pao-Yang Chen	Jun 20, 2018
GSE86583	Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	20		GFF XLSX SRA Run Selector	Xiaoqi Feng	Dec 12, 2017
GSE76406	GC-rich coding sequences reduce transposon-like sRNA-mediated transgene silencing in Arabidopsis and maize	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	49		TXT XLSX SRA Run Selector	Blake C. Meyers	Oct 30, 2017
GSE80054	Transcriptome-wide RNA 5-methylcytosine methylation in siliques, shoots and roots and root gene expression profiling of Arabidopsis thaliana	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	29		XLS XLSX	Alice Louise Burgess	Apr 07, 2017
GSE61439	Pol-IV dependent transcripts in Arabidopsis	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	42		PDF TXT WIG XLSX SRA Run Selector	Steve Jacobsen	Sep 13, 2015