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2234 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Homo sapiens
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE21714	Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors	Methylation profiling by high throughput sequencing	Homo sapiens	3	BAM GFF SRA Run Selector	Gareth Wilson	Jan 01, 2011
GSE26810	Regulation of DNA methylation by CK2-mediated phosphorylation of DNMT3A (Methyl-Seq)	Methylation profiling by high throughput sequencing	Homo sapiens	2	BAM SRA Run Selector	Matthieu Defrance	Jul 17, 2014
GSE27619	Deep sequencing reveals distinct patterns of DNA methylation and transcript isoform regulation in prostate cancer	Expression profiling by array Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	39	BAM TXT	Jung Kim	May 03, 2011
GSE29069	Global DNA Hypomethylation Coupled to Repressive Chromatin Domain Formation and Gene Silencing in Breast Cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	14	BAM	Gary Chung Hon	Sep 16, 2011
GSE29120	Bisulfite sequencing of ChIP DNA on breast cancer cells (HCC1954)	Methylation profiling by high throughput sequencing	Homo sapiens	3	BAM SRA Run Selector	Gary Chung Hon	Sep 16, 2011
GSE29127	Genome-wide DNA methylation mapping in breast cancer cells (HCC1954) and normal breast cells (HMEC)	Methylation profiling by high throughput sequencing	Homo sapiens	2	BAM SRA Run Selector	Gary Chung Hon	Sep 16, 2011
GSE29251	Genome-wide analysis distinguishes hyperglycemia regulated epigenetic signatures of primary vascular cells (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	13	BAM BED SRA Run Selector	Assam El-Osta	Jun 01, 2011
GSE30558	Bisulphite-sequencing of chromatin immunoprecipitated DNA (BisChiP-seq) directly informs methylation status	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	2	BAM BED CSV WIG SRA Run Selector	Mark Robinson	Jan 18, 2012
GSE33579	Base-resolution analyses of parent-of-origin and sequence dependent allele specific DNA methylation in the mouse genome (MRE-seq)	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	5	BAM TXT SRA Run Selector	Wei Xie	Feb 15, 2012
GSE33722	Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BAM BED TXT	Wei Xie	Feb 15, 2012
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE47966	Global epigenomic reconfiguration during mammalian brain development	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	65	BAM TXT SRA Run Selector	Joseph R Ecker	Jul 03, 2013
GSE180292	Genome-wide differential methylation analysis of ovarian cancer and normal tissue samples	Methylation profiling by high throughput sequencing	Homo sapiens	8	BAM SRA Run Selector	VIVEK KUMAR	Oct 05, 2021
GSE225975	Direct enzymatic sequencing of 5-methylcytosine at single-base resolution	Methylation profiling by high throughput sequencing	Cloning vector pUC19 Escherichia phage Lambda Escherichia phage T4 Homo sapiens	35	BAM TXT	Rahul M. Kohli	Apr 24, 2023
GSE252200	Reversal of C9orf72 mutation-induced transcriptional dysregulation and pathology in cultured human neurons by allele-specific excision	Methylation profiling by high throughput sequencing	Homo sapiens	5	BAM BED BW	Claire Clelland	Jan 02, 2024
GSE45342	Fundamental differences in promoter CpG island DNA hypermethylation between human cancer and genetically engineered mouse models of cancer	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	31	BAR CEL TXT	Scott J. Diede	Oct 10, 2013
GSE52688	The RON receptor tyrosine kinase promotes metastasis by triggering epigenetic reprogramming through the thymine glycosylase MBD4 (Bisulfite-Seq)	Methylation profiling by high throughput sequencing	Homo sapiens	18	BAR SRA Run Selector	Stephanie Cunha	Jan 02, 2014
GSE40429	96 mRRBS libraries: Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA	Methylation profiling by high throughput sequencing	Homo sapiens	96	BB TXT SRA Run Selector	Kendell Clement	Aug 29, 2012