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2254 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Homo sapiens
GSE43512	Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates	Methylation profiling by high throughput sequencing	Anolis carolinensis Danio rerio Gallus gallus Homo sapiens Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	24	BED SRA Run Selector	David Sims	Jan 22, 2013
GSE21673	Relationship between nucleosome positioning and DNA methylation	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Arabidopsis thaliana Homo sapiens	6	CEL TXT	matteo Pellegrini	May 29, 2010
GSE21821	Relationship between nucleosome positioning and DNA methylation: Bisulfite-Seq, ChIP-Seq, and Mnase-Seq	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Homo sapiens	4	TXT SRA Run Selector	matteo Pellegrini	May 29, 2010
GSE241969	Genome-wide distribution of 5-hydroxymethyluracil and chromatin accessibility in the Breviolum minutum genome	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Bigelowiella natans Breviolum minutum Candida albicans Homo sapiens Saccharomyces cerevisiae	34	BEDGRAPH BIGWIG	Georgi Kolev Marinov	Oct 19, 2023
GSE63330	DNA methylation in mammalian placentas	Methylation profiling by high throughput sequencing	Bos taurus Canis lupus familiaris Equus caballus Homo sapiens Macaca mulatta Monodelphis domestica Mus musculus Saimiri boliviensis	20	TAR SRA Run Selector	Janine LaSalle	Aug 05, 2015
GSE74026	Differential DNA Methylation Analysis without a Reference Genome	Methylation profiling by high throughput sequencing	Bos taurus Cyprinus carpio Homo sapiens	44	BED FA SRA Run Selector	Christoph Bock	Dec 03, 2015
GSE157436	An Evolutionary Cancer Epigenetic approach revealed DNA hypermethylation of Ultra-Conserved Non-coding Elements in squamous cell carcinoma of different mammalian species	Methylation profiling by high throughput sequencing	Bos taurus Canis lupus familiaris Equus caballus Felis catus Homo sapiens Hystrix cristata Meles meles	120	XLSX SRA Run Selector	Luca Morandi	Sep 04, 2020
GSE175615	Conservation and divergence of DNA methylation patterns and functions in vertebrates	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Bos taurus Canis lupus familiaris Gallus gallus Homo sapiens Mus musculus Oryctolagus cuniculus Sus scrofa	62	BW IGV SRA Run Selector	Michael Weber	Mar 23, 2022
GSE86059	The rate of ageing-associated DNA methylation dynamics is a molecular readout of lifespan variation amongst mammalian species	Methylation profiling by high throughput sequencing Methylation profiling by genome tiling array	Canis lupus familiaris Heterocephalus glaber Homo sapiens Macaca mulatta Mus musculus	84	TXT	Robert Lowe	Jan 17, 2018
GSE149679	Comparative analysis of genome-wide DNA methylation identifies patterns that associate with conserved transcriptional programs in osteosarcoma	Methylation profiling by high throughput sequencing	Canis lupus familiaris Homo sapiens	68	BED TXT XLSX SRA Run Selector	Lauren Mills	May 01, 2020
GSE167075	m6A modification in SARS-CoV-2 virus regulates host cell innate immune response	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Chlorocebus aethiops Homo sapiens Severe acute respiratory syndrome coronavirus 2	16	BEDGRAPH BW XLSX SRA Run Selector	Na Li	Apr 27, 2021
GSE225975	Direct enzymatic sequencing of 5-methylcytosine at single-base resolution	Methylation profiling by high throughput sequencing	Cloning vector pUC19 Escherichia phage Lambda Escherichia phage T4 Homo sapiens	35	BAM TXT	Rahul M. Kohli	Apr 24, 2023
GSE112438	Cell type purification by single-cell transcriptome-trained sorting	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Danio rerio Homo sapiens	73	COV CSV TXT SRA Run Selector	Aditya Barve	Oct 07, 2019
GSE127780	Whole transcriptome bisufilte sequencing for multiple species	Methylation profiling by high throughput sequencing	Danio rerio Drosophila melanogaster Homo sapiens Mus musculus Xenopus laevis Xenopus tropicalis	67	CSV	Rui Zhang	Feb 27, 2022
GSE136456	Transcriptionally regulated energy metabolism drives early erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Danio rerio Homo sapiens	66	BED TXT WIG	Leonard Zon	Jun 09, 2021
GSE118785	H3K36me2 recruits DNMT3A and shapes intergenic DNA methylation landscapes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	43	BW TDF SRA Run Selector	Carmen Rivas	Aug 30, 2019
GSE148761	Identifying the impact of NSUN6 mutants on tRNA methylation	Methylation profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens	7	TXT SRA Run Selector	Rui Zhang	Oct 29, 2020
GSE148763	Bisulfite sequencing for poly(A)+ RNA	Methylation profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens	25	CSV SRA Run Selector	Rui Zhang	Oct 29, 2020
GSE148764	Sequence- and structure-selective mRNA m5C methylation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens	31	CSV TXT	Rui Zhang	Oct 29, 2020
GSE180796	Anchor-Based Bisulfite Sequencing determines genome-wide DNA methylation	Methylation profiling by high throughput sequencing	Escherichia coli Homo sapiens	15	BEDGRAPH BW SRA Run Selector	Benjamin Delatte	May 23, 2022