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58 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Homo sapiens		NARROWPEAK
GSE104988	KDM5B links cellular transcriptome heterogeneity to therapy resistance	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	333	BED BROADPEAK BW NARROWPEAK TSV TXT	Kornelia Polyak	Oct 03, 2018
GSE241347	Chromatin-associated LTR RNA m5C oxidation by TET2 regulates leukemogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	291	BED BIGWIG BROADPEAK NARROWPEAK TXT	Xiaoyang Dou	Jul 24, 2024
GSE112658	Comprehensive Epigenetic Landscape of Rheumatoid Arthritis Fibroblast-like Synoviocytes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	213	BED BROADPEAK NARROWPEAK TSV	Gary S Firestein	Apr 30, 2018
GSE144530	A human tissue map of 5-hydroxymethylcytosines exhibits tissue specificity through gene and enhancer modulation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	192	NARROWPEAK TXT SRA Run Selector	Xiaolong Cui	Oct 28, 2020
GSE112027	HPV	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	181	BED NARROWPEAK	Elana Judith Fertig	Mar 20, 2018
GSE175484	Mapping the glucocorticoid gene regulatory network and alterations that contribute to steroid resistance in childhood acute lymphoblastic leukemia	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	130	BED NARROWPEAK TXT	Daniel Savic	Aug 25, 2022
GSE189861	Transcriptomic and Epigenomic Profiles of CIC-knockout and IDH1 mutant cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	116	BED NARROWPEAK TSV	Marco A Marra	Nov 30, 2021
GSE182017	Pluripotency-Independent Induction of Human Trophoblast Stem Cells from Fibroblasts	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	114	BED BROADPEAK BW NARROWPEAK TXT	Yosef Buganim	Feb 21, 2023
GSE130140	Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens	92	BED BW COV MATRIX NARROWPEAK SF TAR TXT SRA Run Selector	Zhenjia Wang	Aug 19, 2020
GSE171074	The potential of epigenetic therapy to target the 3D epigenome in endocrine-resistant breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array Other Methylation profiling by high throughput sequencing	Homo sapiens	88	BED BW HIC IDAT NARROWPEAK TXT	Joanna Achinger-Kawecka	Dec 12, 2021
GSE144034	5-hydroxymethylation highlights the heterogeneity in keratinization and cell junctions in head and neck cancers	Methylation profiling by high throughput sequencing	Homo sapiens	72	NARROWPEAK SRA Run Selector	Siyu Liu	Sep 01, 2020
GSE236728	Synthetic essentiality of thymine DNA glycosylase in p53-deficient cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	69	BEDGRAPH BW MTX NARROWPEAK TSV	Zhenyu Shao	Jun 19, 2024
GSE149670	Epigenome Dysregulation Resulting from NSD1 mutation in Head and Neck Squamous Cell Carcinoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	67	BW NARROWPEAK RDA TXT SRA Run Selector	Jacek Majewski	Feb 08, 2021
GSE165891	Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	57	CGMAP NARROWPEAK TSV SRA Run Selector	Ryan Lister	Jul 04, 2022
GSE224820	Multiplexed Methylated DNA Immunoprecipitation Sequencing (Mx-MeDIP-Seq) to Study DNA Methylation Using Low Amounts of DNA	Methylation profiling by high throughput sequencing	Homo sapiens	56	NARROWPEAK	Vel Murugan	Dec 31, 2024
GSE228707	Bisulfite-free base-resolution sequencing of oxidized cytosines (APOBEC-seq) reveals a ubiquitous role of thymine DNA glycosylase in active gene promoters and an interaction with MBD3/NuRD	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	55	COV NARROWPEAK	Moshe Szyf	Jun 30, 2023
GSE241222	IGF2BP3 promotes mRNA degradation through internal m7G modification	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	52	BED NARROWPEAK TXT	Xiaoyang Dou	Jul 13, 2024
GSE230602	ZNF397 Deficiency Triggers TET2-Driven Lineage Plasticity and AR-Targeted Therapy Resistance in Prostate Cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	51	BW NARROWPEAK TXT	Ping Mu	Apr 05, 2024
GSE118093	N6-methyladenine DNA Modification in Glioblastoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens	50	BED BIGWIG BW NARROWPEAK TDF TXT	Jeremy Rich	Nov 01, 2018
GSE128269	A Unique Epigenomic Landscape Defines Human Erythropoiesis	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	49	BW NARROWPEAK TXT	Vince Schulz	Sep 11, 2019