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1279 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Homo sapiens		SRA Run Selector
GSE17001	High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED TXT SRA Run Selector	Emily Hodges	Jul 08, 2009
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE17554	Nucleosome deposition and DNA methylation at coding region boundaries	Methylation profiling by high throughput sequencing	Homo sapiens	1	BED SRA Run Selector	Jung Kyoon Choi	Aug 11, 2009
GSE19418	Dynamic Changes in the Human Methylome During Differentiation	Methylation profiling by high throughput sequencing	Homo sapiens	3	TXT SRA Run Selector	Chia-Lin Wei	Dec 29, 2009
GSE19937	Human embryonic stem cells HELP-tagging cytosine methylation data (Albert Einstein College of Medicine)	Methylation profiling by high throughput sequencing	Homo sapiens	4	BED SRA Run Selector	John Greally	Apr 12, 2010
GSE21242	Chromatin and Sequence Features that Define the Fine and Gross Structure of Genomics Methylation Patterns	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	8	BED TXT SRA Run Selector	John R. Edwards	Apr 16, 2010
GSE19889	Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa (Illumina)	Methylation profiling by high throughput sequencing	Homo sapiens	7	WIG SRA Run Selector	Antoine Peters	May 16, 2010
GSE21821	Relationship between nucleosome positioning and DNA methylation: Bisulfite-Seq, ChIP-Seq, and Mnase-Seq	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Homo sapiens	4	TXT SRA Run Selector	matteo Pellegrini	May 29, 2010
GSE17972	The DNA methylome of human peripheral blood mononuclear cells	Methylation profiling by high throughput sequencing	Homo sapiens	77	TXT SRA Run Selector	Hong zhi Cao	Sep 04, 2010
GSE21442	Comprehensive analysis of orphan CpG islands identifes novel promoters with conserved DNA methylation dynamics	Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	32	BEDGRAPH SRA Run Selector	Adrian P Bird	Oct 05, 2010
GSE24546	Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias and copy number variation	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing Genome variation profiling by SNP array	Homo sapiens	40	CEL MAP TXT SRA Run Selector	Mark Robinson	Oct 08, 2010
GSE25246	BI Human Reference Epigenome Mapping Project: Characterization of DNA methylation by RRBS	Methylation profiling by high throughput sequencing	Homo sapiens	10	WIG SRA Run Selector	BROAD INSTITUTE	Nov 11, 2010
GSE25247	BI Human Reference Epigenome Mapping Project: Characterization of DNA methylation by RRBS in human subject	Methylation profiling by high throughput sequencing	Homo sapiens	55	WIG SRA Run Selector	BROAD INSTITUTE	Nov 11, 2010
GSE25248	BI Human Reference Epigenome Mapping Project: Characterization of DNA methylation by RRBS in HUES lines	Methylation profiling by high throughput sequencing	Homo sapiens	11	WIG SRA Run Selector	BROAD INSTITUTE	Nov 11, 2010
GSE21714	Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors	Methylation profiling by high throughput sequencing	Homo sapiens	3	BAM GFF SRA Run Selector	Gareth Wilson	Jan 01, 2011
GSE27239	Bisulfite sequencing data of one human DNA sample	Methylation profiling by high throughput sequencing	Homo sapiens	32	SRA Run Selector	Yao Qiong	Feb 12, 2011
GSE26139	Epigenetic regulation of cell type-specific expression patterns in the human mammary epithelium [MSDK-Seq]	Methylation profiling by high throughput sequencing	Homo sapiens	12	TXT SRA Run Selector	Kornelia Polyak	Mar 01, 2011
GSE27584	DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha	Methylation profiling by high throughput sequencing	Homo sapiens	202	BED BEDRRBS SRA Run Selector	ENCODE DCC	Mar 01, 2011
GSE27003	Deep Sequence Analysis of the Relationship between Gene Expression, CpG Island Methylation, and Gene Copy Number in Breast Cancer Cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	24	TXT SRA Run Selector	Zhifu Sun	Mar 16, 2011