15470 series
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Accession Title Series type(s) Organism(s) Samples GDS Supplementary Contact Release date
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GSE53984
Identification of Replication Timing Domains Using DNN-HMM
Wenjie Shu May 25, 2015
GSE54296
Transcription Factor Highly Occupied Target (HOT) Regions of 145 Cell Lines
Wenjie Shu Jan 14, 2015
GSE80795
CpG island mediated linear and spatial gene partitioning (other data sets)
Jonghwan Kim Feb 15, 2018
GSE80799
Implications of CpG islands on chromosomal architectures and modes of global gene regulation
Jonghwan Kim Feb 15, 2018
GSE93834
Compute the Significant Interactions of Hi-C data through HOMER
hebing chen May 09, 2017
GSE97092
The repressive genome compartment is established early in the cell cycle before forming the lamina associated domains II (re-analysis)
Karen Reddy Mar 27, 2020
GSE103294
The landscape of A-to-I RNA editome from 462 individuals human genomes
Wenjie Shu Aug 31, 2017
GSE107672
Transcriptional responses to RTS,S induced vaccination in controlled human malaria infection studies
Daniel Zak Apr 21, 2020
GSE123012
The landscape of A-to-I RNA editome in mouse embryonic development
Chenghui Zhao Nov 28, 2018
GSE144893
Epigenomic and Topological Mechanisms Regulate Transcriptional Programs in Hepatocellular Carcinoma Cells
  • Other
Liuyang Cai Jul 11, 2023
GSE161259
Hi-C ES and neocortex from Bonev et al. 2017
Lucille Lopez-Delisle Nov 12, 2020
GSE161378
DBX2 REGULATION IN LIMBS SUGGESTS INTER-TAD SHARING OF ENHANCERS [HiC reanalysis]
Lucille Lopez-Delisle Jan 23, 2021
GSE164767
Annotation- and Batch Effect Correction in TCGA IsomiR Expression Data [Third-party re-analysis]
Susanne Ibing Feb 17, 2021
GSE193943
PLK1 inhibition selectively induces apoptosis in ARID1A deficient cells through uncoupling of oxygen consumption from ATP production -- DATA HAVE BEEN MOVED TO GSE193942
  • Other
Anand D Jeyasekharan Mar 06, 2022
GSE196366
Induction of broadly reactive influenza antibodies increases susceptibility to autoimmunity
  • Other
Jeremy Chase Crawford Feb 09, 2022
GSE213262
DNA Methylome and 3D Chromatin Landscape of Cell Types Across the Mouse Brain
Joseph R Ecker Apr 13, 2023
GSE229113
Hi-C ES and neocortex from Bonev et al. 2017 on mm39
Lucille Lopez-Delisle Apr 06, 2023
GSE232215
K562 and human brain transcriptomes, and various epigenomes from K562 and human/mouse brain curated from public databases and re-analyzed for comparison with the single-stranded DNA open-chromatin detected by CHEX-seq
    Junhyong Kim Oct 19, 2023
    GSE233377
    Twins: A deep learning method for replicate-based conformation contact map analysis.
    Ediem Al-jibury Jun 30, 2023
    GSE242815
    hictk: blazing fast toolkit to work with .hic and .cool files
    Roberto Rossini Sep 14, 2023