Identification of Replication Timing Domains Using DNN-HMM

CpG island mediated linear and spatial gene partitioning (other data sets)

The repressive genome compartment is established early in the cell cycle before forming the lamina associated domains II (re-analysis)

DBX2 REGULATION IN LIMBS SUGGESTS INTER-TAD SHARING OF ENHANCERS [HiC reanalysis]

Reanalysis of TSA-Seq mapping to determine genomic coordinates for speckles-associated domains.

Integrative regulatory mapping indicates that the RNA-binding protein HuR (ELAVL1) couples pre-mRNA processing and mRNA stability [sequence data]

Next-generation sequencing of Okazaki fragments extracted from Saccharomyces cerevisiae

Hot spots of DNA double-strand breaks and genomic contacts of human rDNA units are involved in epigenetic regulation [DSBs]

4C-seq indicate interactive sites with the sequence close from Meis2 promoter

Allele-Specific Analysis of DNA Replication Origins in Mammalian Cells

Ets homologous factor regulates pathways controlling response to injury in Calu-3 airway epithelial cells [DNAse-seq]

Distinct and shared molecular targets and functions of ALS-associated TDP-43, FUS, and TAF15 revealed by comprehensive multi-system integrative analyses [CLIP-Seq]

HNRNPA2B1 regulates alternative RNA processing in the nervous system and accumulates in granules in ALS IPSC-derived motor neurons [iCLIP-seq]

Identification of PARP1-RNA binding in-vivo using PAR-CLiP Sequencing

Natural RNA polymerase aptamers regulate transcription in E. coli [SELEX]

HepG2 Hi-C

MyoD induced enhancer RNA interacts with hnRNPL protein via CAAA motif to activate target gene transcription during myogenic differentiation [CLIP-Seq]

PARIS analysis of mouse Xist RNA structure

Multileveled reduction of p21 expression by Linc-ASEN represses cellular senescence [ChIRP-seq]

Dynamic imaging of nascent RNA reveals general principles of transcription dynamics and pervasive recursive splicing [primer extension]