GEO Browser - GEO

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1084 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other			BEDGRAPH
GSE113985	Single-cell DNA replication profiling identifies spatiotemporal developmental dynamics of chromosome organization	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	960	BEDGRAPH BIGWIG TXT	Ichiro Hiratani	Jun 26, 2019
GSE114470	Single-cell DNA replication profiling identifies spatiotemporal developmental dynamics of chromosome organization [scRepli-seq]	Other	Mus musculus	884	BEDGRAPH BIGWIG TXT SRA Run Selector	Ichiro Hiratani	Jun 26, 2019
GSE138646	Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	790	BEDGRAPH FPKM_TRACKING WIG	Xiao Ge	Mar 02, 2020
GSE142089	Dynamics of chromatin marks and the role of EZH2/JMJD3/P300 during hepatoblast differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	658	BED BEDGRAPH CSV SRA Run Selector	Cheng-ran Xu	Jun 26, 2023
GSE210817	Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	571	BEDGRAPH FPKM_TRACKING WIG	Xiao Ge	Oct 31, 2023
GSE105012	Single cell chromatin immunocleavage sequencing (scChIC-Seq) to profile histone modification	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	425	BED BEDGRAPH TXT SRA Run Selector	Keji Zhao	Mar 28, 2019
GSE211574	Replication dynamics identifies the folding principles of the inactive X chromosome	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	369	BEDGRAPH WIG	Rawin Poonperm	Jul 11, 2023
GSE111121	Profiling of pluripotency factors in single cells and early embryos	Other	Mus musculus	361	BEDGRAPH SRA Run Selector	Sarah J Hainer	Jul 20, 2018
GSE138919	Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection [IV]	Other	Homo sapiens Mus musculus	358	BEDGRAPH SRA Run Selector	Xiao Ge	Mar 06, 2020
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE226268	The AAV capsid can influence the epigenetic marking of rAAV delivered episomal genomes in a species dependent manner	Other	Homo sapiens Mus musculus	342	BEDGRAPH	Katja Pekrun	Feb 28, 2023
GSE148185	Three-dimensional chromatin interactions remain stable upon CAG/CTG repeat expansion	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	275	BEDGRAPH BIGWIG TXT VCF	Gustavo Agustín Ruiz Buendía	Apr 07, 2020
GSE148958	Systematic Functional Characterization of Antisense eRNA of Protocadherin alpha HS5-1 Enhancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	274	BEDGRAPH FPKM_TRACKING HIC SRA Run Selector	Yuxiao Zhou	Oct 02, 2021
GSE140611	Dichotomous Engagement of HDAC3 Activity Governs Inflammatory Responses	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	273	BEDGRAPH BIGWIG TDF	Hoang Nguyen	Apr 30, 2020
GSE138645	Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection [III]	Other	Mus musculus	272	BEDGRAPH SRA Run Selector	Xiao Ge	Mar 01, 2020
GSE108556	Genome-wide stability of DNA replication program in single mammalian cells	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	266	BEDGRAPH BIGWIG TXT SRA Run Selector	Ichiro Hiratani	Dec 13, 2018
GSE103477	Transcription elongation regulates genome 3D structure	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	253	BED BEDGRAPH HIC TXT SRA Run Selector	Christopher Benner	Aug 23, 2018
GSE241338	Genome-wide interference of chromatin architecture and Mediator in transcriptional bursting and gene network regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	250	BEDGRAPH BW CSV MTX TSV	Seolkyoung Jung	Jun 30, 2024
GSE225257	Outward-oriented sites within clustered CTCF boundaries are key for intraTAD chromatin interactions and gene regulation [4C-seq]	Other	Homo sapiens Mus musculus	248	BEDGRAPH TXT	Xiao Ge	Oct 31, 2023
GSE130383	The corepressors GPS2 and SMRT control enhancer and silencer function linked to eRNA transcription during inflammatory activation of macrophages	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	247	BEDGRAPH TXT XLSX SRA Run Selector	Zhiqiang Huang	Jan 26, 2021