GEO Browser - GEO

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88 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other			BROADPEAK
GSE166074	A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis [Cut&Run IFNgvsCtr]	Other	Mus musculus	21	BROADPEAK NARROWPEAK WIG SRA Run Selector	Eneritz Agirre	Jan 28, 2022
GSE166075	A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis [Cut&Run EZH2i]	Other	Mus musculus	24	BROADPEAK WIG SRA Run Selector	Eneritz Agirre	Jan 28, 2022
GSE130270	Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	149	BEDGRAPH BROADPEAK BW TXT	Frederick W Alt	Sep 25, 2019
GSE142781	CTCF orchestrates long-range cohesin-driven V(D)J recombinational scanning	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	170	BEDGRAPH BROADPEAK BW TXT	Frederick W Alt	May 11, 2020
GSE245529	KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Solanum lycopersicum	51	BIGWIG BROADPEAK NARROWPEAK	Jing An	Jul 11, 2024
GSE262006	Temporal constraints on enhancer usage shape the regulation of limb gene transcription	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	123	BROADPEAK BW H5 TXT	Guillaume Andrey	Mar 22, 2024
GSE182512	EWS-FLI1 and HOXD13 control tumor cell plasticity in Ewing sarcoma [CUT&RUN]	Other	Homo sapiens	22	BROADPEAK BW NARROWPEAK SRA Run Selector	April Apfelbaum	Jun 28, 2022
GSE182513	EWS-FLI1 and HOXD13 control tumor cell plasticity in Ewing sarcoma	Expression profiling by high throughput sequencing Other	Homo sapiens	40	BROADPEAK BW NARROWPEAK TXT	April Apfelbaum	Jun 28, 2022
GSE171749	SETDB1/NSD dependent H3K9me3/H3K36me3 dual heterochromatin maintains gene expression profiles by bookmarking poised enhancers	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	88	BED BROADPEAK BW HIC TXT SRA Run Selector	Amandine BARRAL	Jan 25, 2022
GSE148321	Dietary palmitic acid promotes a prometastatic epigenetic memory related to tumor innervation	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	1134	BROADPEAK BW CEL MTX TSV XLS ZIP	Antoni Berenguer-LLergo	Nov 16, 2021
GSE144412	Hi-CoP, a simple and robust assay for detecting interactions of regulatory regions	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	8	BROADPEAK BW HIC TXT SRA Run Selector	Hao bingtao	Jan 29, 2020
GSE158288	Phase separation of Epstein-Barr virus EBNA2 reorganizes chromatin topology for epigenetic regulation	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	25	BED BROADPEAK BW HIC TXT SRA Run Selector	Hao bingtao	Sep 22, 2020
GSE265888	Dynamic Chromatin Boundaries of TCR Loci Coincide V(D)J recombination During T Cell Development	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	79	BED BEDGRAPH BEDPE BROADPEAK BW CSV HIC MATRIX TXT	Hao bingtao	Apr 27, 2024
GSE234699	SMYD5 is a regulator of the mild hypothermia response	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	127	BEDGRAPH BROADPEAK BW H5	Hans Tomas Bjornsson	Jul 26, 2024
GSE95804	The BET protein BRD2 cooperates with CTCF to enforce transcriptional and architectural boundaries	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	12	BIGWIG BROADPEAK	Gerd A Blobel	Mar 31, 2017
GSE120637	A technique to detect native R-loops genome-wide without immunoprecipitation	Other	Homo sapiens	37	BROADPEAK BW SRA Run Selector	Roberto Bonasio	Oct 18, 2019
GSE161596	Deletion of the helicase RTEL1 in RNA:DNA hybrids throughout the genome and how this may be affected by overexpression of the protein WT RNaseH1GFP in MEFs	Other	Mus musculus	8	BIGWIG BROADPEAK SRA Run Selector	Simon J Boulton	Jan 04, 2021
GSE161597	RTEL1 regulates G4/R-loops to avert replication-transcription collisions	Other Expression profiling by high throughput sequencing	Mus musculus	29	BIGWIG BROADPEAK	Simon J Boulton	Jan 04, 2021
GSE128135	RNA is essential for PRC2 chromatin occupancy and function in human pluripotent stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	140	BROADPEAK BW CSV NARROWPEAK SRA Run Selector	Tom Cech	May 31, 2020
GSE184498	Co-existing TP53 and ARID1A mutations promote aggressive endometrial tumorigenesis [CUT&RUN]	Other	Mus musculus	4	BROADPEAK SRA Run Selector	Ronald L. Chandler	Dec 13, 2021