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6792 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other			SRA Run Selector
GSE25310	Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs	Expression profiling by array Other	Mus musculus	12	CEL TXT SRA Run Selector	A Bhutkar	Jan 10, 2011
GSE13750	Genome-Wide Analysis In Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	8	TXT SRA Run Selector	Nicholas T Ingolia	Feb 12, 2009
GSE21739	Comprehensive comparative analysis of strand-specific RNA sequencing methods	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	15	BEDGRAPH TXT SRA Run Selector	Joshua Z Levin	Aug 15, 2010
GSE21975	Diverse endonucleolytic cleavage sites in the mammalian transcriptome depend upon microRNAs, Drosha, and additional nucleases	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	27	SRA Run Selector	Fedor Karginov	Jun 25, 2010
GSE21977	De novo transcriptome sequencing in Anopheles funestus using Illumina RNA-seq technology	Expression profiling by high throughput sequencing Other	Anopheles funestus	1	BAM SRA Run Selector	Jacob Crawford	Dec 01, 2010
GSE22068	Expanding the MicroRNA Targeting Code: A Novel Type of Site with Centered Pairing	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Danio rerio Homo sapiens	11	TXT SRA Run Selector	Jin-Wu Nam	Jun 25, 2010
GSE23694	Analysis and design of RNA sequencing experiments for identifying mRNA isoform regulation	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	6	SAM SRA Run Selector	Eric T Wang	Nov 07, 2010
GSE23943	Epigenome and transcriptome of naive pluripotent mouse embryonic stem (ES) cells cultured in 2i serum-free medium	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	41	BED WIG SRA Run Selector	Hendrik Marks	Apr 27, 2012
GSE24521	Polycomb preferentially targets stalled promoters of coding and non-coding transcripts	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster	14	WIG SRA Run Selector	Daniel Enderle	Dec 21, 2010
GSE25107	Native elongating transcript sequencing (NET-seq) of wild type Saccharomyces cerevisiae and of DST1, RCO1, SET1, SET2, EAF3 deletion strains	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	7	WIG SRA Run Selector	L. Stirling Stirling Churchman	Jan 19, 2011
GSE26687	Predicting a human gut microbiota's response to diet in gnotobiotic mice.	Expression profiling by high throughput sequencing Other	Agathobacter rectalis ATCC 33656 Bacteria Bacteroides caccae ATCC 43185 Bacteroides ovatus ATCC 8483 Bacteroides thetaiotaomicron VPI-5482 Blautia hydrogenotrophica DSM 10507 Collinsella aerofaciens ATCC 25986 Desulfovibrio piger GOR1 Escherichia coli str. K-12 substr. MG1655 Marvinbryantia formatexigens DSM 14469 [Clostridium] symbiosum	490	TXT SRA Run Selector	Jeremiah J Faith	May 20, 2011
GSE26757	Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Other	Medicago sativa	6	FASTA TXT SRA Run Selector	Sam Yang	Apr 21, 2011
GSE26880	PARP1- and CTCF-mediated interactions between active and repressed chromatin at the lamina promote oscillating transcription	Expression profiling by high throughput sequencing Other	Homo sapiens	23	TXT SRA Run Selector	Anita Göndör	Aug 27, 2015
GSE27292	High-resolution analysis of parent-of-origin-allelic expression in Arabidopsis seeds	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	2	TXT SRA Run Selector	Marc Rehmsmeier	Apr 30, 2011
GSE30839	Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity of Mammalian Proteomes	Expression profiling by high throughput sequencing Other	Mus musculus	18	TXT SRA Run Selector	Nicholas T Ingolia	Nov 03, 2011
GSE32060	Widespread regulation of translation by elongation pausing in heat shock	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	15	BED SAM SRA Run Selector	Reut Shalgi	Jan 03, 2013
GSE32284	IBM1, a JmjC domain histone demethylase, is involved in the regulation of RNA-directed DNA methylation through epigenetic control of RDR2 and DCL3 expression in Arabidopsis.	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Arabidopsis thaliana	4	TXT SRA Run Selector	Di Fan	Aug 03, 2012
GSE33178	Widespread Generation of Alternative UTRs Contributes to Sex-specific RNA Binding by UNR	Expression profiling by high throughput sequencing Other	Drosophila melanogaster	10	TXT SRA Run Selector	Giulio Pavesi	Oct 25, 2011
GSE33592	Wide-scale analysis of alternative polyadenylation (APA) associated with proliferation and transformation using 3'-Seq	Expression profiling by high throughput sequencing Other	Homo sapiens	10	WIG SRA Run Selector	Ran Elkon	Jun 18, 2012
GSE34438	Ribosome profiling of wild-type and loc1- cells in S. cerevisiae	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	4	WIG SRA Run Selector	Suzanne Komili	Jan 01, 2014