GEO Browser - GEO

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651 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Mus musculus		BED
GSE22627	PARE analysis of six mouse tissues to investigate cleavage products and degradome	Other	Mus musculus	6	BED TXT	Jan Marek Szubert	Jul 31, 2010
GSE23943	Epigenome and transcriptome of naive pluripotent mouse embryonic stem (ES) cells cultured in 2i serum-free medium	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	41	BED WIG SRA Run Selector	Hendrik Marks	Apr 27, 2012
GSE24622	FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing.	Other	Mus musculus	10	BED TXT SRA Run Selector	Andrew V Uzilov	Nov 07, 2010
GSE26373	High-throughput mapping of he promoters of the mouse olfactory receptor genes reveals a new type of mammalian promoters	Other	Mus musculus	3	BAR BED CEL TXT	Eleanor Josephine Clowney	Jun 01, 2011
GSE28682	Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells	Methylation profiling by high throughput sequencing Other	Mus musculus	9	BED SRA Run Selector	William Abraham Pastor	Apr 21, 2011
GSE31330	Identification of RNAs associated with the epigenetic activator MLL1 in undifferentiated and differentiated CJ7 mouse embryonic stem cells.	Other	Mus musculus	3	BAR BED CEL	Frank Sauer	Sep 16, 2011
GSE32060	Widespread regulation of translation by elongation pausing in heat shock	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	15	BED SAM SRA Run Selector	Reut Shalgi	Jan 03, 2013
GSE33184	Retroviral mutagenesis in haploid ES cells	Other	Mus musculus	2	BED TXT SRA Run Selector	Ulrich Elling	Oct 25, 2011
GSE35519	Chromosomal translocations are guided by the spatial organization of the genome	Other	Mus musculus	7	BED TXT SRA Run Selector	Rachel Patton McCord	Feb 16, 2012
GSE38497	Muscleblind-Like 2 mediated alternative splicing in the developing bain by mRNA sequencing	Expression profiling by high throughput sequencing Other	Mus musculus	9	BED BEDGRAPH PDF XLS SRA Run Selector	Ranjan Batra	Aug 16, 2012
GSE40173	Global changes in the nuclear positioning of chromatin domains and genomic interactions that orchestrate B cell fate	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19	BED BEDGRAPH TXT SRA Run Selector	Christopher Benner	Oct 09, 2012
GSE40468	Cold induced RNA-binding proteins influence alternative polyadenylation	Expression profiling by high throughput sequencing Other	Mus musculus	10	BED TXT SRA Run Selector	Yuting Liu	May 01, 2013
GSE41583	Spatial Compartmentalization at the Nuclear Periphery Characterized by Genome-wide Mapping	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BED BEDGRAPH SRA Run Selector	Jie Yao	Oct 30, 2013
GSE41785	Global analysis of Upf1 in mESCs reveals expanded scope of nonsense-mediated mRNA decay	Expression profiling by high throughput sequencing Other	Mus musculus	23	BED FPKM_TRACKING SRA Run Selector	Jessica Hurt	Jun 12, 2013
GSE42237	The genomic landscape of cohesin-associated chromatin interactions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	26	BED BW SRA Run Selector	Laura DeMare	May 22, 2013
GSE43008	Flexible chromatin loops in the VH gene region of the Igh locus facilitate the generation of a diverse antibody repertoire	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	112	BED TXT SRA Run Selector	Meinrad Busslinger	Sep 30, 2013
GSE43540	H3K4me3 Interactions with TAF3 Regulate Preinitiation Complex Assembly and Selective Gene Activation [HIT-Seq]	Other	Mus musculus	4	BED SRA Run Selector	Xiaolin Wu	Mar 02, 2013
GSE43542	H3K4me3 Interactions with TAF3 Regulate Preinitiation Complex Assembly and Selective Gene Activation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by array	Homo sapiens Mus musculus	16	BED BW TXT	Xiaolin Wu	Mar 02, 2013
GSE43776	The interactome of POU5F1 upstream enhancer in mouse embryonic stem cells revealed by 4C-Seq	Other	Mus musculus	2	BED SRA Run Selector	Fan Gao	Apr 28, 2013
GSE44163	Let-7 represses Nr6a1 and a mid-gestation developmental program in adult fibroblasts	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Other	Mus musculus	52	BED BW CEL TXT	A Bhutkar	Apr 10, 2013