GEO Browser - GEO

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641 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Mus musculus		BED
GSE228930	3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [MEC_Omni-C]	Other	Mus musculus	6	BED MTX	Gordon K Smyth	Sep 08, 2023
GSE228954	3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [T8_Omni-C]	Other	Mus musculus	6	BED MTX	Gordon K Smyth	Sep 08, 2023
GSE80280	3D structures of individual mammalian genomes reveal principles of nuclear organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BED HDF5 PDB TSV TXT XYZ SRA Run Selector	Andre J Faure	Mar 07, 2017
GSE77645	4C-ker: A method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	16	BED BEDGRAPH TXT SRA Run Selector	Jane Skok	Feb 27, 2016
GSE52281	4C-seq indicate interactive sites with the sequence close from Meis2 promoter	Other	Mus musculus	1	BED WIG SRA Run Selector	Takaho A. Endo	Jan 15, 2014
GSE243476	4DNES18BMU79 - Replicate experiments of in situ Hi-C on olfactory receptor cell with DpnII	Other	Mus musculus	2	BED BW MCOOL PAIRS SRA Run Selector	4DN DCIC	Sep 19, 2023
GSE243477	4DNES425UDGS - Replicate experiments of in situ Hi-C on immediate neuronal precursor cell with DpnII	Other	Mus musculus	2	BED BW MCOOL PAIRS SRA Run Selector	4DN DCIC	Sep 19, 2023
GSE243478	4DNES54YB6TQ - Replicate experiments of in situ Hi-C on olfactory receptor cell with DpnII	Other	Mus musculus	2	BED BW MCOOL PAIRS SRA Run Selector	4DN DCIC	Sep 19, 2023
GSE243479	4DNESEPDL6KY - Replicate experiments of in situ Hi-C on olfactory receptor cell with DpnII	Other	Mus musculus	2	BED BW MCOOL PAIRS SRA Run Selector	4DN DCIC	Sep 19, 2023
GSE243480	4DNESH4UTRNL - Replicate experiments of in situ Hi-C on olfactory receptor cell with DpnII	Other	Mus musculus	2	BED BW MCOOL PAIRS SRA Run Selector	4DN DCIC	Sep 19, 2023
GSE243481	4DNESNYBDSLY - Replicate experiments of in situ Hi-C on olfactory receptor cell with DpnII	Other	Mus musculus	2	BED BW MCOOL PAIRS SRA Run Selector	4DN DCIC	Sep 19, 2023
GSE243482	4DNESRE7AK5U - Replicate experiments of in situ Hi-C on globose cell of olfactory epithelium with DpnII	Other	Mus musculus	1	BED BW MCOOL PAIRS SRA Run Selector	4DN DCIC	Sep 19, 2023
GSE114121	5C-ID: Increased resolution Chromosome-Conformation-CaptureCarbon-Copy with in situ 3C and double alternating primer design	Other	Mus musculus	7	BED TXT SRA Run Selector	Jennifer E Phillips-Cremins	May 07, 2018
GSE131902	5hmC RNA role in mouse Embryonic stem cell differentiation to Embryonic bodies	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	57	BED TXT	Martin Bizet	Jul 16, 2020
GSE183764	9sCa: MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	244	BED BEDPE BW RDATA RDS TSV TXT SRA Run Selector	Asifa Akhtar	Aug 10, 2023
GSE124197	A Genome-wide CRISPR-Based Screen Identifies KAT7 as a Senescence Driver	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	71	BED BIGWIG TXT SRA Run Selector	Yuxuan Zheng	Oct 09, 2020
GSE63271	A Novel Neuron-specific Histone H4K20 Demethylase LSD1n Promotes Transcriptional Elongation and is Essential for Learning and Memory	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	41	BED BEDGRAPH SRA Run Selector	Yuliang Tan	Jul 27, 2015
GSE200062	A SOX2 engineered epigenetic silencer factor represses the glioblastoma genetic program	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	41	BED NARROWPEAK TSV	Luca Massimino	Aug 10, 2022
GSE104814	A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus [HiC_mESC]	Other	Mus musculus	4	BED MATRIX SRA Run Selector	Rasim Barutcu	Feb 12, 2018
GSE104427	A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus [RNA-Seq, HiC_C2C12, ChIP-Seq]	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	27	BED BEDGRAPH MATRIX TXT SRA Run Selector	Rasim Barutcu	Feb 12, 2018