GEO Browser - GEO

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456 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Mus musculus		BEDGRAPH
GSE205783	Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	170	BEDGRAPH BIGWIG COOL NARROWPEAK TXT	Lucille Lopez-Delisle	Apr 28, 2023
GSE77645	4C-ker: A method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	16	BED BEDGRAPH TXT SRA Run Selector	Jane Skok	Feb 27, 2016
GSE144699	4C-seq HD project	Other	Mus musculus	43	BEDGRAPH SRA Run Selector	Jonathan Seguin	Oct 16, 2020
GSE161194	4C-seq analysis of three-dimensional chromatin interactions at the mouse Shox2 locus during embryonic limb development	Other	Mus musculus	4	BEDGRAPH SRA Run Selector	John Cobb	Jun 30, 2021
GSE61371	4C-seq: Clustering of mammalian Hox genes with other H3K27me3 targets within an active nuclear domain	Other	Mus musculus	32	BEDGRAPH BW SRA Run Selector	Marion LELEU	Mar 23, 2015
GSE55342	4C-seq: Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci	Other	Mus musculus	41	BEDGRAPH BW SRA Run Selector	Marion LELEU	Apr 28, 2014
GSE63271	A Novel Neuron-specific Histone H4K20 Demethylase LSD1n Promotes Transcriptional Elongation and is Essential for Learning and Memory	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	41	BED BEDGRAPH SRA Run Selector	Yuliang Tan	Jul 27, 2015
GSE123388	A Preformed Chromatin Architecture Ensures Robust Shh Transcription during Limb Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	54	BEDGRAPH BW	Christina Paliou	May 13, 2019
GSE123382	A Preformed Chromatin Architecture Ensures Robust Shh Transcription during Limb Development [4C-seq]	Other	Mus musculus	4	BEDGRAPH SRA Run Selector	Christina Paliou	May 13, 2019
GSE123384	A Preformed Chromatin Architecture Ensures Robust Shh Transcription during Limb Development [Capture Hi-C]	Other	Mus musculus	19	BEDGRAPH TXT SRA Run Selector	Christina Paliou	May 13, 2019
GSE119991	A SUMOylation-induced Satb1/Satb2 switch drives embryonic stem cell differentiation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	57	BEDGRAPH H5	Pierre Daniel Cauchy	Jul 08, 2021
GSE67357	A Stringent Systems Approach Uncovers Gene-Specific Mechanisms Regulating Inflammation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	166	BEDGRAPH	Stephen Smale	Jan 18, 2016
GSE67355	A Stringent Systems Approach Uncovers Gene-Specific Mechanisms Regulating Inflammation [RNA-Seq]	Expression profiling by high throughput sequencing Other	Mus musculus	128	BEDGRAPH SRA Run Selector	Stephen Smale	Jan 18, 2016
GSE45457	A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs	Genome binding/occupancy profiling by genome tiling array Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	29	BEDGRAPH CEL	Marion LELEU	Jun 07, 2013
GSE45455	A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs (4C-Seq)	Other	Mus musculus	15	BEDGRAPH SRA Run Selector	Marion LELEU	Jun 07, 2013
GSE101717	A TAD boundary at the HoxD locus segregates opposing limb regulatory landscapes and their target genes	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	91	BEDGRAPH MATRIX NARROWPEAK TAR TXT	Eddie Rodríguez-Carballo	Dec 22, 2017
GSE101713	A TAD boundary at the HoxD locus segregates opposing limb regulatory landscapes and their target genes [4C-Seq]	Other	Mus musculus	72	BEDGRAPH SRA Run Selector	Eddie Rodríguez-Carballo	Dec 22, 2017
GSE104427	A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus [RNA-Seq, HiC_C2C12, ChIP-Seq]	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	27	BED BEDGRAPH MATRIX TXT SRA Run Selector	Rasim Barutcu	Feb 12, 2018
GSE160427	A Tumor Suppressor Enhancer of PTEN in T-cell development and leukemia	Other	Homo sapiens Mus musculus	30	BEDGRAPH SRA Run Selector	Pedro P Rocha	Dec 17, 2020
GSE138514	A complex regulatory landscape involved in the development of external genitals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	65	BED BEDGRAPH	Ana Rita Amandio Lhopitallier	Apr 25, 2020