GEO Browser - GEO

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609 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Mus musculus		TSV
GSE51334	DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions	Other	Homo sapiens Mus musculus	993	BAM BED BIGWIG BROADPEAK NARROWPEAK PAIR TSV TXT	ENCODE DCC	Nov 20, 2014
GSE148448	Self-reporting transposons enable simultaneous readout of gene expression and transcription factor binding in single cells	Other	Homo sapiens Mus musculus	27	BAM CSV LOOM TSV TXT SRA Run Selector	Robi D Mitra	Jul 23, 2020
GSE80280	3D structures of individual mammalian genomes reveal principles of nuclear organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BED HDF5 PDB TSV TXT XYZ SRA Run Selector	Andre J Faure	Mar 07, 2017
GSE84236	Epigenetic restriction of embryonic and extraembryonic lineages mirrors the somatic transition to cancer	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	200	BED BW TSV	Jiantao Shi	Sep 18, 2017
GSE87064	The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	868	BED BW MTX TSV TXT	Beisi Xu	May 03, 2017
GSE102158	Lnc-31 acts as a molecular scaffold to control the Rock1 mRNA translation	Expression profiling by high throughput sequencing Other	Mus musculus	7	BED TSV SRA Run Selector	Mariangela Morlando	May 09, 2018
GSE111964	XPO5 is required for miRNA biogenesis and promotes primary miRNA processing independent of RanGTP	Other Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	13	BED TSV TXT SRA Run Selector	Rui Yi	Feb 19, 2020
GSE112136	Mammalian ISWI and SWI/SNF selectively mediate binding of distinct groups of transcription factors	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	90	BED MATRIX TSV WIG	Dirk Schuebeler	Apr 18, 2019
GSE119693	Dissection of nucleosome remodeling at cis-regulatory elements in stimulated macrophages	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	60	BED TSV	Iros Barozzi	Aug 01, 2019
GSE123133	Transcriptonal and epigenetic changes of adult liver cells in vivo and in vitro	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	42	BED BEDGRAPH TSV TXT XLSX SRA Run Selector	Charles Bradshaw	Aug 29, 2019
GSE128486	SMaRT lncRNA controls translation of a G-quadruplex containing mRNA antagonizing the DHX36 helicase	Expression profiling by high throughput sequencing Other	Mus musculus	7	BED TSV SRA Run Selector	Julie Martone	Mar 18, 2020
GSE129997	Re-configuration of Chromatin Structure During the Mitosis-G1 Phase Progression	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	75	BED BEDGRAPH BW NARROWPEAK TSV SRA Run Selector	Gerd A Blobel	Nov 27, 2019
GSE135896	HELLS and PRDM9 from a pioneer complex to open chromatin at meiotic recombination hotspots	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	51	BED BEDGRAPH TSV SRA Run Selector	Christopher Lee Baker	Dec 17, 2019
GSE141587	Transcriptomic and epigenetic disruptions in excitatory neurons in Dnmt3a conditional knockout mouse	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	49	BED BW TSV TXT SRA Run Selector	Joseph R Ecker	May 23, 2022
GSE142716	Rett Syndrome linked to defects in forming the MeCP2/Rbfox/LASR complex in mouse models	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	28	BED BEDGRAPH BW TSV SRA Run Selector	Xing Fu	Aug 28, 2021
GSE145177	DAZL mediates a broad translational program regulating expansion and differentiation of spermatogonial progenitors	Expression profiling by high throughput sequencing Other	Mus musculus	26	BED TSV TXT	Maria M. Mikedis	Jul 22, 2020
GSE151837	PML-RARa induces dynamic changes in genome architecture during leukemic transformation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	51	BED BEDGRAPH TSV SRA Run Selector	Enrique Blanco	Jun 09, 2022
GSE154009	CTCF chromatin residence time controls 3D genome organization, gene expression and DNA methylation in pluripotent cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	38	BED BW TSV	Niels Galjart	Jun 04, 2021
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE155882	A Transcriptional Switch Governs Fibroblast Activation in Heart Disease	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	56	BED BIGWIG BW CSV MTX TSV WIG SRA Run Selector	Pawel Przytycki	Apr 08, 2021