GEO Browser - GEO

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58 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Arabidopsis thaliana		BW
GSE75506	Profiling of N6-Adenosine (m6A) Methylation in Arabidopsis thaliana wild-type and fip37-4 LEC1:FIP37	Other	Arabidopsis thaliana	8	BW SRA Run Selector	Hao Yu	Jul 25, 2016
GSE75508	RNA-Seq and N6-Adenosine (m6A) Methylation profiling in Arabidopsis thaliana wild-type and fip37-4 LEC1:FIP37	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	14	BW TXT	Hao Yu	Jul 25, 2016
GSE85203	Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes	Other	Arabidopsis thaliana Zea mays subsp. mays	14	BED BW SRA Run Selector	Robert J Schmitz	Nov 30, 2016
GSE95765	Genome-wide maps of R-loops in Arabidopsis	Other	Arabidopsis thaliana	5	BW NARROWPEAK SRA Run Selector	li kuan	May 31, 2017
GSE107883	Functional analysis of HD2C in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Arabidopsis thaliana	9	BW TXT SRA Run Selector	Xuehua Zhong	Mar 01, 2018
GSE108078	RNA-directed DNA methylation involves co-transcriptional small RNA-guided slicing of Pol V transcripts in Arabidopsis.	Non-coding RNA profiling by high throughput sequencing Other	Arabidopsis thaliana	21	BW TXT SRA Run Selector	Wanlu Liu	Jan 29, 2018
GSE110342	Impact of G-content on Arabidopsis AtPAB binding and their role in enhancing translational efficiency	Other Expression profiling by high throughput sequencing	Arabidopsis thaliana	31	BED BW FPKM_TRACKING SRA Run Selector	xiaofeng cao	Aug 14, 2019
GSE113677	Transcription-driven Chromatin Repression of Intragenic Promoters	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	9	BW SRA Run Selector	Maxim Ivanov	Apr 26, 2018
GSE116232	R-loop landscapes in Arabidopsis	Other	Arabidopsis thaliana	53	BW SRA Run Selector	li kuan	Feb 19, 2020
GSE119304	Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation	Other	Arabidopsis thaliana	4	BW SRA Run Selector	Maxim Ivanov	Sep 01, 2018
GSE121683	ALBA protein complex reads genic R-loops to maintain genome stability in Arabidopsis	Other	Arabidopsis thaliana	2	BW SRA Run Selector	Jincong Zhou	Apr 17, 2019
GSE122394	DNA methylation and histone H1 jointly repress transposable elements and aberrant intragenic transcripts	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	132	BW GFF SRA Run Selector	Jaemyung Choi	Nov 20, 2019
GSE125096	pNET-seq (Pol II Ser5) in Arabidopsis	Other	Arabidopsis thaliana	4	BW SRA Run Selector	Jincong Zhou	Nov 01, 2019
GSE128619	Wide spread and efficient co-transcriptional splicing facilitated by multiple exons	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	20	BW XLSX SRA Run Selector	mao fei	Nov 20, 2019
GSE128932	Arabidopsis retrotransposon virus-like-particles and their regulation by epigenetically activated small RNA	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	48	BEDGRAPH BW TXT VCF SRA Run Selector	Robert A Martienssen	Mar 13, 2020
GSE131733	Transient genome-wide adaptations of nascent RNAPII transcription triggered by low temperature	Other	Arabidopsis thaliana	13	BW SRA Run Selector	Maxim Ivanov	Dec 11, 2019
GSE132005	Retrotransposon addiction promotes centromere function via epigenetically activated small RNAs	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Arabidopsis thaliana	77	BEDGRAPH BW TXT SRA Run Selector	Robert A Martienssen	Oct 24, 2022
GSE142555	Characterization of Arabidopsis thaliana promoter bidirectionality and antisense RNAs by depletion of nuclear RNA decay pathways	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	12	BW XLSX SRA Run Selector	Axel Thieffry	Feb 17, 2020
GSE145109	The m6A reader CPSF30-L regulates alternative polyadenylation affecting nitrate signaling in Arabidopsis	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	24	BW SRA Run Selector	Jing Sun	Mar 16, 2021
GSE152465	A photoregulatory mechanism of the circadian clock in plants [MeRIP-seq]	Other	Arabidopsis thaliana	24	BW SRA Run Selector	Lianfeng Gu	Jul 12, 2021