21 series
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Accession Title Series type(s) Organism(s) Samples GDS Supplementary Contact Release date
Remove filtersFilter Remove filterOther Remove filterDanio rerio Remove filterBED
GSE146738
3'GAmES: Systematic refinement of gene termini by mRNA 3' end sequencing
  • Other
  • Link icon Danio rerio
1 Stefan Ludwig Ameres Mar 11, 2020
GSE250450
CUT&RUN profiling of Tfap2a binding genome-wide using zebrafish embryos at 24hpf
  • Other
  • Link icon Danio rerio
2 Colin Kenny Dec 18, 2023
GSE215987
Single-cell chromatin landscape of non-myocytes reveals AP-1 as a key transcriptional regulator contributing to highly cooperative networks among non-myocyte subtypes during zebrafish heart regeneration [Cut&Tag]
  • Other
  • Link icon Danio rerio
4
  • Download icon BED
LI QIAN Feb 26, 2024
GSE74231
Enhancers reside in a unique epigenetic environment during early zebrafish development [ChIP-seq & ATAC-seq]
  • Link icon Danio rerio
7 lucas kaaij Nov 06, 2015
GSE215988
Single-cell chromatin landscape of non-myocytes reveals AP-1 as a key transcriptional regulator contributing to highly cooperative networks among non-myocyte subtypes during zebrafish heart regeneration
  • Link icon Danio rerio
12
  • Download icon BED
LI QIAN Feb 26, 2024
GSE76212
Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition
  • Other
  • Link icon Danio rerio
13 Karla M Neugebauer Mar 24, 2017
GSE188331
Base-resolution DNA hydroxymethylation maps of purple sea urchin (Strongylocentrotus purpuratus), european lancelet (Branchiostoma lanceolatum) and zebrafish (Danio rerio) using ACE-seq
  • Other
15 Ksenia Skvortsova Nov 08, 2021
GSE89815
N6-methyladenosine dynamics during early vertebrate embryogenesis
  • Other
  • Link icon Danio rerio
16 Håvard Aanes May 01, 2017
GSE152423
Multi-modal characterization of chromatin architecture from 24 hpf whole zebrafish embryos
  • Link icon Danio rerio
21 Scott Allen Lacadie Sep 23, 2021
GSE74617
Enhancers reside in a unique epigenetic environment during early zebrafish development
  • Link icon Danio rerio
24 lucas kaaij Nov 06, 2015
GSE110582
Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq
  • Other
24 Giovanni Marsico Aug 01, 2018
GSE167579
Comparative 3D Genome Architecture in Vertebrates (Hi-C)
  • Other
25 Mengnan He Apr 12, 2022
GSE188334
Base-resolution 5-hydroxymethylcytosine maps of sea urchin and lancelet embryos and adult tissues
31 Ksenia Skvortsova Nov 08, 2021
GSE182714
Adar-mediated A-to-I editing is required for establishment of embryonic body axes in zebrafish
  • Link icon Danio rerio
32 Cecilia Lanny Winata Aug 02, 2022
GSE120724
Dynamic landscapes and regulome of mRNA structure during zebrafish early embryogenesis
  • Link icon Danio rerio
34 Jinsong Zhang Apr 14, 2020
GSE250267
EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS
34 Aurelie Hintermann Apr 17, 2024
GSE167581
Comparative 3D Genome Architecture in Vertebrates
54 Mengnan He Apr 12, 2022
GSE183002
Comprehensive genome wide analysis of Satb2 function during vertebrate embryogenesis
75 Sanjeev Galande Sep 02, 2021
GSE79213
The functions of m6A and Ythdf2 during zebrafish early development
  • Link icon Danio rerio
76 Boxuan Simen Zhao Feb 07, 2017
GSE123105
Selective roles of vertebrate PCF11 in premature and full-length transcript termination
95 Kinga Kamieniarz-Gdula Feb 25, 2019