63 series
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Accession Title Series type(s) Organism(s) Samples GDS Supplementary Contact Release date
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GSE22068
Expanding the MicroRNA Targeting Code: A Novel Type of Site with Centered Pairing
11 Jin-Wu Nam Jun 25, 2010
GSE23762
Off-Target Analysis of Zinc Finger Nucleases
  • Link icon Danio rerio
21 Scot Wolfe Aug 25, 2010
GSE38125
Transcriptomic profiles of zebrafish embryos exposed to silver (nanoparticles, bulk and ions) using HT-SuperSAGE in a Illumina GA2 platform
  • Other
  • Link icon Danio rerio
8 Ronny van Aerle Jun 17, 2013
GSE44269
Canonical Nucleosome Organization at Promoters Forms During Genome Activation
  • Link icon Danio rerio
12 Yong Zhang Oct 18, 2013
GSE47558
Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition
  • Link icon Danio rerio
35 Antonio J. Giraldez Sep 22, 2013
GSE47644
Conservation and divergence of regulatory strategies and the origin of tetrapod digits
  • Other
32 Marion LELEU Jan 21, 2014
GSE52830
Obesity-associated variants within FTO form long-range functional connections with IRX3
  • Other
6 Juan J. Tena Feb 24, 2014
GSE61063
Chromatin structure dynamics of hoxa13a, hoxa13b and hoxd13a loci during zebrafish development.
  • Other
  • Link icon Danio rerio
9 Juan J. Tena Jan 06, 2015
GSE61065
ATAC-seq data in mouse and zebrafish limbs
  • Other
3
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Juan J. Tena Jan 06, 2015
GSE66900
Evolutionary comparison reveals that diverging CCCTC-binding factor (CTCF) sites are signatures of ancestral topological associating domains borders
  • Other
63 Carlos Gómez May 18, 2015
GSE68737
A single 3D chromatin compartment in amphioxus Hox cluster suggests a stepwise evolutionary origin for vertebrate Hox bimodal regulatory topologies
74 Juan J. Tena Dec 16, 2015
GSE74231
Enhancers reside in a unique epigenetic environment during early zebrafish development [ChIP-seq & ATAC-seq]
  • Link icon Danio rerio
7 lucas kaaij Nov 06, 2015
GSE74616
Enhancers reside in a unique epigenetic environment during early zebrafish development [4C-seq]
  • Other
  • Link icon Danio rerio
18 lucas kaaij Nov 06, 2015
GSE75351
A zebrafish melanoma model reveals emergence of neural crest identity during melanoma initiation [ATAC-Seq]
  • Other
  • Link icon Danio rerio
2 Leonard Zon Feb 01, 2016
GSE76212
Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition
  • Other
  • Link icon Danio rerio
13 Karla M Neugebauer Mar 24, 2017
GSE79213
The functions of m6A and Ythdf2 during zebrafish early development
  • Link icon Danio rerio
76 Boxuan Simen Zhao Feb 07, 2017
GSE81533
Massively parallel whole-organism lineage tracing using CRISPR/Cas9 induced genetic scars
  • Other
  • Link icon Danio rerio
60 Bastiaan Spanjaard May 17, 2019
GSE85713
Profiling DNA Replication Timing in Zebrafish Embryos Reveals Dynamic Regulation During Development
  • Other
  • Link icon Danio rerio
12 Christopher Lee Sansam Apr 13, 2017
GSE87604
The embryo-larval and adult parts of the zebrafish major alpha/beta-globin gene locus are functionally and structurally independent
  • Other
  • Link icon Danio rerio
4 Aleksandra Galitsyna Jul 12, 2017
GSE89655
Transcriptomics analysis of gene expressions, m6A enrichment levels and ythdf2 binding targets in control and mettl3 or ythdf2 morphants zebrafish embryos
  • Link icon Danio rerio
18 Bao-Fa Sun Sep 08, 2017