GEO Browser - GEO

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31 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Escherichia coli K-12
GSE107973	RecBCD Coordinates Repair of Two Ends at a DNA Double-Strand Break, Preventing Aberrant Chromosome Amplification [MFA]	Other	Escherichia coli K-12	10	CSV FASTA SRA Run Selector	Benura Azeroglu	Jul 18, 2018
GSE107974	RecBCD Coordinates Repair of Two Ends at a DNA Double-Strand Break, Preventing Aberrant Chromosome Amplification	Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli K-12	18	CSV TXT	Benura Azeroglu	Jul 18, 2018
GSE106849	CRISPR RNA-dependent binding and cleavage of endogenous RNAs by the Campylobacter jejuni Cas9	Expression profiling by high throughput sequencing Other	Campylobacter jejuni Escherichia coli K-12	13	TXT WIG XLSX SRA Run Selector	Thorsten Bischler	Mar 01, 2018
GSE141315	Genome-wide tracking of DNA polymerase III in E. coli	Other	Escherichia coli K-12	12	BEDGRAPH SRA Run Selector	Anders R. Clausen	Jan 09, 2023
GSE107550	The FibroChip, a functional DNA microarray to monitor cellulolysis and hemicellulolysis activities of rumen microbiota	Expression profiling by array Other	Acetivibrio clariflavus Acetivibrio thermocellus Agathobacter rectalis Bacteroides fragilis Bacteroides ovatus Bacteroides sp. Bacteroides thetaiotaomicron Bacteroides xylanisolvens Bacteroides xylanisolvens XB1A Bifidobacterium adolescentis Bifidobacterium animalis Bifidobacterium longum Butyrivibrio fibrisolvens Butyrivibrio hungatei Cellulomonas fimi Cellulomonas flavigena Cellulosilyticum ruminicola Clostridioides difficile Clostridium acetobutylicum Clostridium beijerinckii Clostridium cellulovorans Enterobacter sp. Enterococcus faecium Epidinium caudatum Epidinium ecaudatum Escherichia coli K-12 Eudiplodinium maggii Fibrobacter intestinalis Fibrobacter succinogenes Fibrobacter succinogenes subsp. succinogenes S85 Lachnospira eligens Lactococcus lactis Levilactobacillus brevis Limosilactobacillus fermentum Neocallimastix frontalis Neocallimastix patriciarum Orpinomyces joyonii Orpinomyces sp. Piromyces communis Piromyces rhizinflatus Piromyces sp. Piromyces sp. 'equi' Polyplastron multivesiculatum Pseudobacteroides cellulosolvens Pseudobutyrivibrio xylanivorans Roseburia hominis Roseburia intestinalis Ruminiclostridium cellulolyticum Ruminococcus albus Ruminococcus champanellensis Ruminococcus flavefaciens Ruminococcus sp. Segatella bryantii Selenomonas ruminantium Xylanibacter ruminicola [Eubacterium] cellulosolvens bovine gut metagenome uncultured Neocallimastigales	14	TXT	Sophie Comtet-Marre	Dec 01, 2017
GSE171533	Differential gene expression between the uL22 K90D mutant variant and wild type uL22 containing cells	Expression profiling by high throughput sequencing Other	Escherichia coli K-12	12	TXT SRA Run Selector	Luis Rogelio Cruz	Apr 06, 2021
GSE213876	Sequencing of N6-methyl-deoxyadenosine at single-base resolution across the mammalian genome	Other Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Escherichia coli K-12 Mus musculus synthetic construct	67	NARROWPEAK TXT	Xiaolong Cui	Dec 28, 2023
GSE131520	RNA-RNA interactomes of Hfq and ProQ reveal overlapping and competing roles for RNA chaperones	Other	Escherichia coli K-12	56	BED WIG SRA Run Selector	Ryan Dale	Dec 08, 2019
GSE241317	Bacterial Stress Bodies – Ancestral Condensates Regulating RNA Turnover and Protein Translation I	Other	Escherichia coli K-12	4	BEDGRAPH	Lydia Freddolino	Apr 01, 2024
GSE241322	Bacterial Stress Bodies – Ancestral Condensates Regulating RNA Turnover and Protein Translation	Expression profiling by high throughput sequencing Other	Escherichia coli K-12 Escherichia coli str. K-12 substr. MG1655	102	BEDGRAPH	Lydia Freddolino	Apr 01, 2024
GSE35821	Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling [TSS-Seq]	Expression profiling by high throughput sequencing Other	Escherichia coli K-12 Klebsiella pneumoniae	4	TXT SRA Run Selector	Donghyuk Kim	Jul 30, 2012
GSE35822	Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling	Expression profiling by array Expression profiling by high throughput sequencing Other	Escherichia coli K-12 Klebsiella pneumoniae Klebsiella pneumoniae subsp. pneumoniae MGH 78578	6	PAIR	Donghyuk Kim	Jul 30, 2012
GSE221930	The transcriptome-wide mapping of 2-methylthio-N6-isopentenyladenosine at single-base resolution by ReACT-seq	Other	Escherichia coli K-12	11	BED TXT	Ziang Lu	Mar 15, 2023
GSE66517	Identification of sRNA binding to ITSmetZW and ITSmetWV using MS2-affinity purification coupled with RNA sequencing (MAPS) technology	Other	Escherichia coli K-12	2	TXT SRA Run Selector	Eric Massé	Apr 16, 2015
GSE66518	MS2-affinity purification coupled with RNA sequencing (MAPS) reveals RybB sRNA targetome	Other	Escherichia coli K-12	2	TXT SRA Run Selector	Eric Massé	Apr 16, 2015
GSE66519	MS2-affinity purification coupled with RNA sequencing (MAPS) reveals RyhB sRNA targetome	Other	Escherichia coli K-12	2	TXT SRA Run Selector	Eric Massé	Apr 16, 2015
GSE66520	MS2-affinity purification coupled with RNAseq (MAPS) revealed functional tRNA-derived RNA fragments	Other	Escherichia coli K-12	6		Eric Massé	Apr 16, 2015
GSE80019	MS2-affinity purification coupled with RNA sequencing (MAPS) reveals GcvB sRNA targetome.	Other	Escherichia coli K-12	2	TXT SRA Run Selector	Eric Massé	Dec 06, 2018
GSE80020	MS2-affinity purification coupled with RNA sequencing (MAPS) reveals RprA sRNA targetome.	Other	Escherichia coli K-12	2	TXT SRA Run Selector	Eric Massé	Jan 03, 2018
GSE113584	MS2-affinity purification coupled with RNA sequencing (MAPS) revealed MicF sRNA targetome.	Other	Escherichia coli K-12	2	TXT SRA Run Selector	Eric Massé	Mar 05, 2023