GEO Browser - GEO

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1546 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Homo sapiens		BED
GSE31105	Chromatin Conformation Capture in two biological replicates of K562 cells to identify interactions between tRNA genes in human cells.	Other	Homo sapiens	2	BAM BED SRA Run Selector	Jesse Raab	Oct 10, 2011
GSE33664	Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	10	BAM BED BW TXT SRA Run Selector	Guoliang Li	Jan 20, 2012
GSE51334	DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions	Other	Homo sapiens Mus musculus	993	BAM BED BIGWIG BROADPEAK NARROWPEAK PAIR TSV TXT	ENCODE DCC	Nov 20, 2014
GSE51341	Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence	Other	Homo sapiens Mus musculus	32	BAM BED BIGWIG BROADPEAK NARROWPEAK TXT WIG	ENCODE DCC	Nov 19, 2014
GSE77629	Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites [eCLIP - 293T cells]	Other	Homo sapiens	24	BB BED BW SRA Run Selector	Gene Yeo	Mar 28, 2016
GSE77634	Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites	Expression profiling by array Expression profiling by high throughput sequencing Other	Homo sapiens	100	BB BED BW CEL	Gene Yeo	Mar 28, 2016
GSE80039	Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites [eCLIP - HepG2/K562 cells]	Other	Homo sapiens	63	BB BED BW SRA Run Selector	Gene Yeo	Apr 07, 2016
GSE81553	TSA-Seq Mapping of Nuclear Genome Organization [seq]	Other	Homo sapiens	43	BB BED BW SRA Run Selector	Andrew S Belmont	Apr 25, 2018
GSE86035	SONAR discovers RNA binding proteins from analysis of large-scale protein-protein interactomes.	Other	Homo sapiens	17	BB BED BW SRA Run Selector	Gene Yeo	Oct 06, 2016
GSE112782	The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells [CLIP-Seq]	Expression profiling by high throughput sequencing Other	Homo sapiens	10	BB BED BW CSV SRA Run Selector	En-Ching Luo	Oct 16, 2019
GSE14535	mRNP-mRNA Association Map (Tier I - G10, HuR, Imp, PABP)	Other	Homo sapiens	33	BED CEL PDF TXT	Sridar V Chittur	Jan 24, 2009
GSE25862	Mapping of INS promoter interactions reveals its role in long-range regulation of SYT8 transcription	Other	Homo sapiens	2	BED GRAPH SRA Run Selector	Iouri Chepelev	Feb 22, 2011
GSE28911	Replication initiation sites in cancer cells	Other	Homo sapiens	7	BED SRA Run Selector	Mirit I Aladjem	Aug 02, 2011
GSE29779	Integrative regulatory mapping indicates that the RNA-binding protein HuR (ELAVL1) couples pre-mRNA processing and mRNA stability [sequence data]	Other	Homo sapiens	1	BED SRA Run Selector	Neelanjan Mukherjee	Aug 19, 2011
GSE29780	Integrative regulatory mapping indicates that the RNA-binding protein HuR (ELAVL1) couples pre-mRNA processing and mRNA stability	Expression profiling by array Other	Homo sapiens	13	BED CEL	Neelanjan Mukherjee	Aug 19, 2011
GSE32060	Widespread regulation of translation by elongation pausing in heat shock	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	15	BED SAM SRA Run Selector	Reut Shalgi	Jan 03, 2013
GSE33584	High-resolution profiling and analysis of viral and host small RNAs during human cytomegalovirus infection	Non-coding RNA profiling by high throughput sequencing Other	Homo sapiens	12	BED SRA Run Selector	Gene Yeo	Nov 10, 2011
GSE34399	Replication Timing by Repli-seq from ENCODE/University of Washington	Other	Homo sapiens	15	BED BIGWIG SRA Run Selector	ENCODE DCC	Apr 27, 2012
GSE34491	Nuclear Matrix Factor hnRNP U/SAF-A Exerts a Global Control of Alternative Splicing by Regulating U2 snRNP Maturation	Expression profiling by high throughput sequencing Other	Homo sapiens	4	BED SRA Run Selector	Xiang-Dong Fu	Feb 16, 2012
GSE35405	Sequence and expression analysis of human chromosome 20 gaps	Other Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	7	BED WIG SRA Run Selector	Sheroy Minocherhomji	Apr 17, 2012