GEO Browser - GEO

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1254 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Homo sapiens		BW
GSE33664	Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	10	BAM BED BW TXT SRA Run Selector	Guoliang Li	Jan 20, 2012
GSE43542	H3K4me3 Interactions with TAF3 Regulate Preinitiation Complex Assembly and Selective Gene Activation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by array	Homo sapiens Mus musculus	16	BED BW TXT	Xiaolin Wu	Mar 02, 2013
GSE43801	Enrichment of processed pseudogene transcripts in L1-ribonucleoprotein particles	Expression profiling by high throughput sequencing Other	Homo sapiens	5	BW SRA Run Selector	Adam D Ewing	May 21, 2013
GSE44267	Cohesin and CTCF Differentially Affect the Chromatin Architecture and Gene Expression in Human Cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	18	BW RPKM TXT SRA Run Selector	Jesse R Dixon	Dec 16, 2013
GSE48518	Interactions between JARID2 and noncoding RNAs regulate PRC2 recruitment to chromatin	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	45	BW	Roberto Bonasio	Dec 25, 2013
GSE50610	Role of DNA methylation in modulating transcription factor occupancy	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	23	BED BW SRA Run Selector	Matthew T Maurano	Feb 28, 2014
GSE38275	ChIP-seq and RIP-seq for SCML2 and SCML2 mutants in 293T-REx and K562 cells	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	49	BW WIG	Roberto Bonasio	Jul 02, 2014
GSE52637	HBS1L-MYB intergenic variants modulate fetal hemoglobin via long-range MYB enhancers	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	8	BW SRA Run Selector	Supat Thongjuea	Jul 24, 2014
GSE58907	RepliSeq of HT-1080 cell line	Other	Homo sapiens	6	BED BW SRA Run Selector	John A Stamatoyannopoulos	Jul 31, 2014
GSE58444	The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	66	BW SRA Run Selector	Ruslan Sadreyev	Aug 12, 2014
GSE52600	m6A RNA modification controls cell fate transition in mammalian embryonic stem cells	Other	Homo sapiens	12	BW SRA Run Selector	Jinkai Wang	Oct 20, 2014
GSE63375	Pre-mRNA Splicing is Facilitated by an Optimal RNA Polymerase II Elongation Rate	Expression profiling by high throughput sequencing Other	Homo sapiens	40	BW TXT SRA Run Selector	David L. Bentley	Nov 25, 2014
GSE55306	ChIP-nexus: a novel ChIP-exo protocol for improved detection of in vivo transcription factor binding footprints	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens	18	BW SRA Run Selector	Julia Zeitlinger	Dec 02, 2014
GSE62063	B cell super-enhancers and regulatory clusters recruit AID tumorigenic activity	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	76	BED BW TAB WIG SRA Run Selector	Marei Dose	Dec 04, 2014
GSE62296	Convergent Sense/Antisense Transcription At Intragenic Super-Enhancers Targets AID-initiated Genomic Instability	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	9	BW SRA Run Selector	Feilong Meng	Dec 04, 2014
GSE58638	The effects of the global loss of DNA methylation on the functional cancer epigenome	Genome binding/occupancy profiling by high throughput sequencing Other Third-party reanalysis	Homo sapiens	31	BW SRA Run Selector	Fides D Lay	Feb 06, 2015
GSE54471	Developmental Competence Encoded at the Level of Enhancers	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	53	BW SRA Run Selector	Bing Ren	Mar 31, 2015
GSE67941	Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution	Other	Homo sapiens	12	BW SRA Run Selector	Sheera Adar	Apr 19, 2015
GSE60358	Mammalian NET-seq reveals genome-wide nascent transcription coupled to RNA processing	Expression profiling by high throughput sequencing Other	Homo sapiens	28	BW SRA Run Selector	Tomás Gomes	Apr 23, 2015
GSE66383	Disruptions of Topological Chromatin Domains Causes Pathogenic Rewiring of Gene-Enhancer Interactions	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	31	BEDGRAPH BW	Darío G Lupiáñez	May 08, 2015