GEO Browser - GEO

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1254 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Homo sapiens		BW
GSE33664	Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	10	BAM BED BW TXT SRA Run Selector	Guoliang Li	Jan 20, 2012
GSE109003	Xrn2 accelerates termination by RNA polymerase II, which is underpinned by CPSF73 activity	Expression profiling by high throughput sequencing Other	Homo sapiens	10	BAM BW SRA Run Selector	Steven West	Feb 13, 2018
GSE77629	Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites [eCLIP - 293T cells]	Other	Homo sapiens	24	BB BED BW SRA Run Selector	Gene Yeo	Mar 28, 2016
GSE77633	Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites [iCLIP]	Other	Homo sapiens	1	BB BW SRA Run Selector	Gene Yeo	Mar 28, 2016
GSE77634	Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites	Expression profiling by array Expression profiling by high throughput sequencing Other	Homo sapiens	100	BB BED BW CEL	Gene Yeo	Mar 28, 2016
GSE80039	Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites [eCLIP - HepG2/K562 cells]	Other	Homo sapiens	63	BB BED BW SRA Run Selector	Gene Yeo	Apr 07, 2016
GSE81553	TSA-Seq Mapping of Nuclear Genome Organization [seq]	Other	Homo sapiens	43	BB BED BW SRA Run Selector	Andrew S Belmont	Apr 25, 2018
GSE86035	SONAR discovers RNA binding proteins from analysis of large-scale protein-protein interactomes.	Other	Homo sapiens	17	BB BED BW SRA Run Selector	Gene Yeo	Oct 06, 2016
GSE101938	Variation in single-nucleotide sensitivity of eCLIP derived from reverse transcription conditions	Other	Homo sapiens	62	BB BW SRA Run Selector	Gene Yeo	Aug 10, 2017
GSE112782	The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells [CLIP-Seq]	Expression profiling by high throughput sequencing Other	Homo sapiens	10	BB BED BW CSV SRA Run Selector	En-Ching Luo	Oct 16, 2019
GSE113394	Nucleotide resolution of RNA polymerase II transcription in human cytomegalovirus	Other	Homo sapiens	13	BB BW SRA Run Selector	David H Price	Jan 16, 2019
GSE118716	Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine resistant breast cancer	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	40	BB BW HIC TXT VCF	Joanna Achinger-Kawecka	Dec 11, 2019
GSE159326	POINT technology illuminates the processing of polymerase-associated intact nascent transcripts	Other	Homo sapiens	78	BB BW SRA Run Selector	Rui Sousa-Luís	Mar 19, 2021
GSE183930	Linking circular intronic RNA degradation and function in transcription by RNase H1	Other Expression profiling by high throughput sequencing	Homo sapiens	26	BB BW	Li Yang	Dec 18, 2023
GSE234716	KMT2D regulates gene expression through regulating promoters/enhances upon glucose deprivation.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	29	BCF BW NARROWPEAK TXT	Cunyu Wang	Jul 05, 2024
GSE43542	H3K4me3 Interactions with TAF3 Regulate Preinitiation Complex Assembly and Selective Gene Activation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by array	Homo sapiens Mus musculus	16	BED BW TXT	Xiaolin Wu	Mar 02, 2013
GSE50610	Role of DNA methylation in modulating transcription factor occupancy	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	23	BED BW SRA Run Selector	Matthew T Maurano	Feb 28, 2014
GSE58907	RepliSeq of HT-1080 cell line	Other	Homo sapiens	6	BED BW SRA Run Selector	John A Stamatoyannopoulos	Jul 31, 2014
GSE62063	B cell super-enhancers and regulatory clusters recruit AID tumorigenic activity	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	76	BED BW TAB WIG SRA Run Selector	Marei Dose	Dec 04, 2014
GSE69583	Musashi-2 Post-transcriptionally Attenuates Aryl Hydrocarbon Receptor Signaling to Expand Human Hematopoietic Stem Cells	Other	Homo sapiens	2	BED BW SRA Run Selector	Gene Yeo	Apr 27, 2016