GEO Browser - GEO

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1333 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Homo sapiens		BW
GSE118725	Systematic Analysis of Transcription Factors Binding to Noncoding Variants	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens synthetic construct	11359	BW HIC NARROWPEAK TSV TXT VCF SRA Run Selector	Yunjiang Qiu	Oct 28, 2020
GSE175521	A genetic disorder reveals a hematopoietic stem cell regulatory network co-opted in leukemia	Expression profiling by high throughput sequencing Other	Homo sapiens	1751	BW H5 NARROWPEAK TXT	Liming Tao	Nov 23, 2022
GSE148321	Dietary palmitic acid promotes a prometastatic epigenetic memory related to tumor innervation	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	1134	BROADPEAK BW CEL MTX TSV XLS ZIP	Antoni Berenguer-LLergo	Nov 16, 2021
GSE87064	The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	868	BED BW MTX TSV TXT	Beisi Xu	May 03, 2017
GSE208449	DNA hypomethylation restrains early antitumor immunity in prostate cancer	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	703	BIGWIG BW TSV	Ben S. Wittner	Jun 14, 2023
GSE154233	Diverse Heterochromatin-Associated Proteins Repress Distinct Classes of Genes and Repetitive Elements	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	460	BW	Ryan Lehman McCarthy	Jun 24, 2021
GSE126918	Loss of CHD1 promotes chromatin dysregulation leading to heterogeneous mechanisms of resistance to hormone therapy in prostate cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens synthetic construct	453	BW TXT	Ping Mu	Mar 26, 2020
GSE167381	LKB1 inactivation initiates a chromatin remodeling cascade to drive metastatic progression	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	441	BW CSV RDS TSV TXT XLSX ZIP SRA Run Selector	Jeffrey Michael Granja	Apr 30, 2021
GSE219071	mDRIP-seq is a high-throughput method for quantitative R-loop landscape profiling	Other Expression profiling by high throughput sequencing	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	384	BW TXT	Changbin Sun	Jun 11, 2024
GSE107768	Best practices for eCLIP experiments and analysis	Other	Homo sapiens	378	BED BW	Gene Yeo	Jun 08, 2018
GSE204988	Recycling of H2A-H2B provides short-term memory of chromatin states	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	366	BW TXT	Anja Groth	Feb 06, 2023
GSE219068	mDRIP-seq: a high-throughput method for R-loop mapping and quantitative assessment	Other	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	356	BW	Changbin Sun	Jun 11, 2024
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE104988	KDM5B links cellular transcriptome heterogeneity to therapy resistance	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	333	BED BROADPEAK BW NARROWPEAK TSV TXT	Kornelia Polyak	Oct 03, 2018
GSE172335	Nucleotide depletion promotes cell fate transitions by inducing DNA replication stress	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	284	BW CSV MTX TXT	Brian Do	May 04, 2024
GSE249492	ARID1A regulates DSB repair through chromatin organization and its deficiency triggers DNA damage-mediated immune response	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	280	BIGWIG BW TSV	Christoph Plass	Jun 12, 2024
GSE229062	Marker-based CRISPR screening reveals a direct MED12-p63 interaction that activates basal identity in pancreatic ductal adenocarcinoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	276	BW H5SEURAT TXT	Diogo Maia e Silva	Dec 06, 2023
GSE97669	Promoter of lncRNA gene PVT1 is a tumor suppressor DNA element	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	267	BW NARROWPEAK TXT	Howard Y. Chang	May 31, 2018
GSE185708	A hyper-quiescent chromatin state is a barrier to productive regeneration during aging.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	256	BW TXT	Supriyo De	Mar 17, 2023
GSE241338	Genome-wide interference of chromatin architecture and Mediator in transcriptional bursting and gene network regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	250	BEDGRAPH BW CSV MTX TSV	Seolkyoung Jung	Jun 30, 2024