GEO Browser - GEO

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1074 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Homo sapiens		CSV
GSE148448	Self-reporting transposons enable simultaneous readout of gene expression and transcription factor binding in single cells	Other	Homo sapiens Mus musculus	27	BAM CSV LOOM TSV TXT SRA Run Selector	Robi D Mitra	Jul 23, 2020
GSE164779	Hierarchical chromatin regulation during blood formation uncovered by single-cell sortChIC	Other	Homo sapiens Mus musculus	106	BAM CSV TXT SRA Run Selector	Jake Yeung	Nov 30, 2021
GSE112782	The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells [CLIP-Seq]	Expression profiling by high throughput sequencing Other	Homo sapiens	10	BB BED BW CSV SRA Run Selector	En-Ching Luo	Oct 16, 2019
GSE48249	Genome-wide analysis of miRNA-mRNA interactions in the marrow microenvironment	Other Non-coding RNA profiling by array	Homo sapiens	22	BED BEDGRAPH CSV	Manoj Pillai	Sep 01, 2013
GSE74308	Antisense transcription predicts a distinct chromatin environment at mammalian promoters	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	7	BED BW CSV XLSX SRA Run Selector	Christopher Lavender	Feb 11, 2017
GSE74716	SMARCA4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	12	BED BEDGRAPH CSV TSV SRA Run Selector	Rasim Barutcu	Jun 02, 2016
GSE77707	Distinct and shared functions of ALS-associated TDP-43, FUS, and TAF15 revealed by comprehensive multi-system integrative analyses	Expression profiling by array Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	48	BED CEL CSV WIG	Gene Yeo	Jul 05, 2016
GSE78507	Enhanced CLIP uncovers IMP protein-RNA targets in human pluripotent stem cells important for cell adhesion and survival [eCLIP-Seq]	Other	Homo sapiens	10	BED BW CSV SRA Run Selector	Gene Yeo	Apr 07, 2016
GSE78509	Enhanced CLIP uncovers IMP protein-RNA targets in human pluripotent stem cells important for cell adhesion and survival	Other Expression profiling by high throughput sequencing	Homo sapiens	15	BED BW CSV	Gene Yeo	Apr 07, 2016
GSE86464	HNRNPA2B1 regulates alternative RNA processing in the nervous system and accumulates in granules in ALS IPSC-derived motor neurons	Expression profiling by array Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	124	BED BW CEL CSV	Gene Yeo	Oct 20, 2016
GSE97409	Induced human forebrain neurons overexpressing MAPT demonstrate chromatin structure alterations	Other	Homo sapiens	36	BED CSV SRA Run Selector	Hans-Ulrich Klein	Dec 07, 2018
GSE98509	MYOD Remodeling of the Genome Architecture during Myogenic Conversion of Somatic Cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis Other	Homo sapiens	16	BED BW CSV NARROWPEAK TXT SRA Run Selector	Alessandra Dall'Agnese	Sep 10, 2019
GSE103233	Eviction of repressor PRC1 via RNA-binding of PHC1 promotes stress-induced transcription	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	15	BED CSV SRA Run Selector	Tommy Beat Schlumpf	Aug 01, 2023
GSE107447	Altered chromosomal topology drives oncogenic programs in SDH-deficient GISTs	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	100	BED BW CSV HIC TXT	Yotam Drier	Oct 16, 2019
GSE117084	Safeguarding nucleolar homeostasis by CBX4 alleviates senescence and osteoarthritis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	22	BED BW CSV SRA Run Selector	Boqiang John Hu	Jul 13, 2019
GSE128382	Identification and characterization of artery and vein enhancers in the human genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	58	BED BIGWIG BW CSV NARROWPEAK TXT SRA Run Selector	Nathan D. Lawson	Feb 14, 2020
GSE134377	Dynamic imaging of nascent RNA reveals general principles of transcription dynamics and pervasive recursive splicing	Expression profiling by high throughput sequencing Other	Homo sapiens	23	BED CSV	Daniel R Larson	May 13, 2021
GSE135882	GPSeq Reveals the radial organization of chromatin in the cell nucleus	Other	Homo sapiens	28	BED CSV TXT ZIP SRA Run Selector	Gabriele Girelli	May 25, 2020
GSE137906	Mapping DNA interaction landscapes in psoriasis susceptibility loci highlights KLF4 as a target gene in 9q31	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	14	BED CSV TXT SRA Run Selector	Paul Martin	Apr 10, 2020
GSE138767	Simultaneous analysis of open chromatin, promoter interactions and gene expression in stimulated T cells implicates GWAS SNPs with causal genes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	36	BED CSV NARROWPEAK TAR TXT SRA Run Selector	Paul Martin	Oct 31, 2019