Target discrimination in nonsense-mediated mRNA decay requires Upf1 ATPase activity (CLIP-Seq)

Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites [eCLIP - 293T cells]

Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites [iCLIP]

Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites [eCLIP - HepG2/K562 cells]

SONAR discovers RNA binding proteins from analysis of large-scale protein-protein interactomes.

Variation in single-nucleotide sensitivity of eCLIP derived from reverse transcription conditions

High-resolution profiling and analysis of viral and host small RNAs during human cytomegalovirus infection

Musashi-2 Post-transcriptionally Attenuates Aryl Hydrocarbon Receptor Signaling to Expand Human Hematopoietic Stem Cells

Enhanced CLIP uncovers IMP protein-RNA targets in human pluripotent stem cells important for cell adhesion and survival [eCLIP-Seq]

HNRNPA2B1 regulates alternative RNA processing in the nervous system and accumulates in granules in ALS IPSC-derived motor neurons [hnRNPA2B1_eCLIP_human_iPSC_MN]

Best practices for eCLIP experiments and analysis [uncertain quality]

Best practices for eCLIP experiments and analysis [poor quality]

Musashi-1 is a master regulator of aberrant translation in Group 3 medulloblastoma

Inhibition of YTHDF2 triggers proteotoxic cell death in MYC-driven breast cancer

Footprinting SHAPE-eCLIP reveals transcriptome-wide hydrogen bonds at RNA-protein interfaces

Discovery and evaluation of CRISPR/Cas-mediated systems for site-specific RNA editing

Robust single-cell discovery of RNA targets of RNA binding proteins and ribosomes [RNA-seq]

Persistent mRNA localization defects and cell death in ALS neurons caused by transient cellular stress

Integrative RNA-omics discovers GNAS alternative splicing as a phenotypic driver of splicing factor mutant neoplasms

Robust single-cell discovery of RNA targets of RNA binding proteins and ribosomes [STAMP_pacbio]