GEO Browser - GEO

Series

Samples

Platforms

DataSets

224 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Non-coding RNA profiling by high throughput sequencing			BED
GSE210270	Transcriptional readthrough as a conserved mechanism for piRNA cluster expression in mosquitoes	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Aedes aegypti	38	BED BROADPEAK NARROWPEAK	Jieqiong Qu	Feb 05, 2023
GSE94787	A small RNA pathway mediates allelic dosage in endosperm [sRNA-seq]	Non-coding RNA profiling by high throughput sequencing	Arabidopsis lyrata Arabidopsis thaliana	49	BED FA TXT SRA Run Selector	Mary Gehring	Dec 15, 2017
GSE25022	sRNA populations of 2 week old seedlings from Arabidopsis ecotypes C24, Ler, and their two reciprocal F1 hybrids	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	4	BED TXT SRA Run Selector	Michael Groszmann	Jan 12, 2011
GSE39037	Deep sequencing of small and uncapped RNA in rdr1/2/6 and wild-type Arabidopsis plants	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	8	BED WIG	Motoaki Seki	Jul 13, 2017
GSE52814	Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	56	BED TXT	Mary Gehring	Jul 08, 2014
GSE66224	Chemical modifications mark alternatively spliced and actively degrading messenger RNAs in Arabidopsis and humans	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Arabidopsis thaliana Homo sapiens	12	BED SRA Run Selector	Lee Elliott Vandivier	Oct 31, 2015
GSE74398	A Dicer-Independent Route for Biogenesis of siRNAs that Direct DNA Methylation in Arabidopsis	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	76	BED TXT SRA Run Selector	Yijun Qi	Dec 17, 2015
GSE81366	Proteome-wide identification of protein poly(ADP-ribosyl)ation targets reveals an important role of FHA domain protein DAWDLE in Arabidopsis immunity	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	6	BED SRA Run Selector	Meera Nair	Feb 13, 2017
GSE132750	Photodamage repair pathways contribute to the accurate maintenance of DNA methylome landscape upon UV exposure	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	31	BED TXT SRA Run Selector	Jean Molinier	Nov 01, 2019
GSE152971	Chromatin regulates expression of small RNAs to help maintain transposon methylome homeostasis in Arabidopsis	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	69	BED BW TSV SRA Run Selector	Ranjith Papareddy	Jun 25, 2020
GSE155368	Epigenetic reprogramming events rewire transcription during the alternation of generations in Arabidopsis [Small RNA-Seq]	Non-coding RNA profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana		BED BW XLSX	Michael Borg	Jan 26, 2021
GSE167484	Innate, translation-dependent silencing of an invasive transposon in Arabidopsis	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	16	BED CSV SRA Run Selector	Stefan Oberlin	Aug 08, 2021
GSE187461	Chromatin-associated Microprocessor assembly is regulated by PRP40 – U1 snRNP auxiliary protein	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	17	BED TXT	Jakub Jacek Dolata	Nov 01, 2022
GSE212021	HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress [ncRNA-Seq]	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	6	BED	Xiangsong Chen	Aug 12, 2023
GSE212022	HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	24	BED BW	Xiangsong Chen	Aug 12, 2023
GSE222751	Pseudouridine in small RNAs	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	68	BED CSV SF TXT	Jakub Jacek Dolata	Aug 07, 2023
GSE224571	Population-level annotation of lncRNAs in Arabidopsis thaliana reveals extensive expression and epigenetic variability associated with TE-like silencing [smallRNAseq]	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	14	BED TXT	Aleksandra Kornienko	Mar 15, 2023
GSE224760	Population-level annotation of lncRNAs in Arabidopsis thaliana reveals extensive expression and epigenetic variability associated with TE-like silencing [lncRNA]	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	87	BED TXT	Aleksandra Kornienko	Mar 15, 2023
GSE233927	Comparative analysis of nascent transcription among plant species	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana Carica papaya Chlamydomonas reinhardtii Drosophila melanogaster Hordeum vulgare Physcomitrium patens Selaginella moellendorffii Zea mays	68	BED TXT XLSX	Sascha Duttke	Sep 28, 2023
GSE243296	Asymmetric bulges within hairpin RNA transgenes influence small RNA size, secondary siRNA production and viral defence II	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	20	BED	Ian K Greaves	Jun 27, 2024