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41 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Non-coding RNA profiling by high throughput sequencing			GFF
GSE18731	AGO pathway	Expression profiling by genome tiling array Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans	6	CEL GFF TXT	Craig Mello	Feb 24, 2010
GSE26284	ENCODE Cold Spring Harbor Labs Long RNA-seq	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	84	BAM BB BEDRNAELEMENTS BIGWIG GFF GTF PDF SRA Run Selector	ENCODE DCC	Dec 28, 2010
GSE55333	Transcriptome wide identification of Dicer binding in human and C. elegans reveals a variety of substrates	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Caenorhabditis elegans Homo sapiens	34	GFF TSV TXT WIG	Marvin Jens	Nov 20, 2014
GSE58131	RNA at 92 °C: the non-coding transcriptome of the hyperthermophilic archaeon Pyrococcus abyssi.	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Pyrococcus abyssi	1	GFF SRA Run Selector	Claire Toffano-Nioche	May 31, 2014
GSE70111	Transcriptional expression level during exponential growth phase in Kluyveromyces marxianus	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Kluyveromyces marxianus	6	GFF TXT SRA Run Selector	Byung-Kwan Cho	Aug 20, 2016
GSE81436	The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	17	BAM BW CSV GFF WIG XLS SRA Run Selector	chao zhou	Jun 13, 2016
GSE122199	Planarians recruit piRNAs for mRNA turnover in adult stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Schmidtea mediterranea	68	BED GFF TXT SRA Run Selector	Claus Kuhn	Sep 04, 2019
GSE123852	Mesostigma viride genome and transcriptome provide insights into the origin and evolution of Streptophyta	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mesostigma viride	24	FASTA GFF TXT	Xiaofeng Gu	Nov 21, 2019
GSE130122	Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa	74	GFF SRA Run Selector	Daniel Zilberman	Jun 29, 2021
GSE161625	Nurse cell-derived small RNAs define paternal epigenetic inheritance in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	61	GFF SRA Run Selector	Xiaoqi Feng	Jul 01, 2021
GSE44898	Imprinted expression of genes and small RNA is triggered by localized demethylation of the maternal genome in rice endosperm	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa	16	GFF SRA Run Selector	Toshiro Nishimura	May 01, 2013
GSE76651	Global Genome Repair factors are essential for shaping the DNA methylation landscape in Arabidopsis	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Arabidopsis thaliana	5	GFF	Jean Molinier	Aug 17, 2016
GSE85975	DNA methylation dynamics during early plant life	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	5	BEDGRAPH GFF SRA Run Selector	Daniel Bouyer	Aug 23, 2017
GSE18231	WAGO pathway	Non-coding RNA profiling by genome tiling array Non-coding RNA profiling by high throughput sequencing Other	Caenorhabditis elegans	20	BAR CEL GFF TAR	Craig Mello	Oct 01, 2009
GSE18215	High throughput sequencing of mutants in the WAGO pathway	Non-coding RNA profiling by high throughput sequencing Other	Caenorhabditis elegans	18	GFF TAR SRA Run Selector	Craig Mello	Oct 01, 2009
GSE18714	Sequential rounds of RNA-dependent RNA transcription drive endogenous small-RNA biogenesis in ERGO-1/Argonaute pathway	Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans	8	GFF SRA Run Selector	Craig Mello	Feb 25, 2010
GSE18729	High throughput sequencing of endogenous small RNAs from AGO pathway mutants	Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans	4	GFF SRA Run Selector	Craig Mello	Feb 24, 2010
GSE20330	Hairpin RNA induces secondary small interfering RNA synthesis and silencing in trans in fission yeast	Non-coding RNA profiling by high throughput sequencing	Schizosaccharomyces pombe	3	BEDGRAPH FNA GFF SRA Run Selector	Alastair Robert Kerr	Feb 15, 2010
GSE21175	Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi	Non-coding RNA profiling by high throughput sequencing	Neurospora crassa	1	GFF TXT SRA Run Selector	Craig Mello	Jul 01, 2010
GSE22252	Global identification of Arabidopsis thaliana ARGONAUTE1-associated small RNA.	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	4	GFF TXT SRA Run Selector	James C Carrington	Jun 21, 2010