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35 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana		BW
GSE65056	In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	10	BW SRA Run Selector	Alexis Maizel	Jan 21, 2015
GSE78088	Arabidopsis AGO3 predominantly recruits 24-nucleotide small RNAs to regulate epigenetic silencing [miRNA-seq]	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	7	BW SRA Run Selector	Xiuying Liu	May 31, 2016
GSE78090	Arabidopsis AGO3 predominantly recruits 24-nucleotide small RNAs to regulate epigenetic silencing	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	BW	Xiuying Liu	May 31, 2016
GSE95473	Defective XRN3-mediated transcription termination in Arabidopsis affects the expression of protein-coding genes [seq]	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	12	BW TXT SRA Run Selector	Michal Krzyszton	Jan 24, 2018
GSE99600	Arabidopsis DXO1 links RNA turnover and chloroplast function independently of its enzymatic activity	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	9	BW TXT SRA Run Selector	Michal Krzyszton	Feb 08, 2019
GSE108078	RNA-directed DNA methylation involves co-transcriptional small RNA-guided slicing of Pol V transcripts in Arabidopsis.	Non-coding RNA profiling by high throughput sequencing Other	Arabidopsis thaliana	21	BW TXT SRA Run Selector	Wanlu Liu	Jan 29, 2018
GSE108401	The Complex Architecture of Transgene Insertions	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	39	BW TSV TXT SRA Run Selector	Joseph R Ecker	Mar 16, 2018
GSE116068	The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	27	BW	xinjian He	Jun 21, 2018
GSE124546	Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	246	BW TXT	Wanlu Liu	Feb 07, 2019
GSE124749	Co-targeting RNA Polymerases IV and V promotes efficient de novo DNA methylation in Arabidopsis [small RNA-seq]	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	39	BW SRA Run Selector	Wanlu Liu	Feb 07, 2019
GSE128932	Arabidopsis retrotransposon virus-like-particles and their regulation by epigenetically activated small RNA	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	48	BEDGRAPH BW TXT VCF SRA Run Selector	Robert A Martienssen	Mar 13, 2020
GSE140138	Intronic long noncoding RNAs activate host gene expression by affecting histone modification in Arabidopsis (smallRNA-seq)	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	2	BW SRA Run Selector	xinjian He	Nov 09, 2019
GSE140140	Intronic long noncoding RNAs activate host gene expression by affecting histone modification in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	16	BW	xinjian He	Nov 09, 2019
GSE148430	The CCR4-NOT complex component NOT1 regulates RNA-directed DNA methylation and transcriptional silencing by facilitating Pol IV-dependent siRNA production	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	12	BW	xinjian He	May 15, 2020
GSE150471	Linking Key Steps of MicroRNA Biogenesis by TREX-2 and the Nuclear Pore Complex in Arabidopsis [miRNA-Seq]	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	12	BW SRA Run Selector	Chenjiang You	Aug 07, 2020
GSE150473	Linking Key Steps of MicroRNA Biogenesis by TREX-2 and the Nuclear Pore Complex in Arabidopsis	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	21	BW TXT	Chenjiang You	Aug 07, 2020
GSE152909	Arabidopsis RBV is a conserved WD40 repeat protein that promotes microRNA biogenesis and ARGONAUTE1 loading [sRNA-seq]	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	18	BW WIG SRA Run Selector	Xuemei Chen	Feb 26, 2022
GSE152911	Arabidopsis RBV is a conserved WD40 repeat protein that promotes microRNA biogenesis and ARGONAUTE1 loading	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	24	BW WIG	Xuemei Chen	Feb 26, 2022
GSE152971	Chromatin regulates expression of small RNAs to help maintain transposon methylome homeostasis in Arabidopsis	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	69	BED BW TSV SRA Run Selector	Ranjith Papareddy	Jun 25, 2020
GSE155368	Epigenetic reprogramming events rewire transcription during the alternation of generations in Arabidopsis [Small RNA-Seq]	Non-coding RNA profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana		BED BW XLSX	Michael Borg	Jan 26, 2021