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275 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana		TXT
GSE35562	Differentiated Truncation and Uridylation Patterns of miRNAs in Arabidopsis and Rice hen1 Mutants Suggest miRNAs May Re-program RISC	Non-coding RNA profiling by high throughput sequencing	Zea mays Oryza sativa Arabidopsis thaliana	33	TXT SRA Run Selector	Blake C. Meyers	Jul 22, 2013
GSE103112	GC-rich coding sequences reduce transposon-like sRNA-mediated transgene silencing in Arabidopsis and maize	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Zea mays Arabidopsis thaliana	76	TXT	Lyudmila V Sidorenko	Oct 30, 2017
GSE124340	A large-scale circular RNA profiling reveals universal molecular mechanisms responsive to drought stress in maize and Arabidopsis	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Zea mays Arabidopsis thaliana	36	TXT SRA Run Selector	Mingqiu Dai	Dec 25, 2018
GSE154165	tRNA-seq and YAMAT-seq profiling the expressions of tRNA-derived fragments and tRNAs in plants	Non-coding RNA profiling by high throughput sequencing	Zea mays Triticum aestivum Sorghum bicolor Setaria italica Hordeum vulgare Glycine max Arabidopsis thaliana	13	TXT XLSX SRA Run Selector	Xuan Ma	Jan 01, 2021
GSE233927	Comparative analysis of nascent transcription among plant species	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Zea mays Selaginella moellendorffii Physcomitrium patens Hordeum vulgare Drosophila melanogaster Chlamydomonas reinhardtii Carica papaya Arabidopsis thaliana	68	BED TXT XLSX	Sascha Duttke	Sep 28, 2023
GSE244009	An improved terminal ribose-modified small RNA sequencing (TRM-sRNA-seq) reveals novel features of miRNA modification and identifies HEN1-independent 2’-O-modified sRNAs derived from tRNAs	Non-coding RNA profiling by high throughput sequencing	Zea mays Solanum lycopersicum Oryza sativa Arabidopsis thaliana	54	TXT	Susu Chen	Sep 11, 2024
GSE114075	Biogenesis of a young, 22-nt microRNA in Phaseoleae species by precursor-programmed uridylation	Non-coding RNA profiling by high throughput sequencing	Vigna radiata Cajanus cajan Arabidopsis thaliana	5	TXT SRA Run Selector	Blake C. Meyers	Jul 06, 2018
GSE20197	Accumulation of TuMV-derived siRNAs in aerial parts of Arabidopsis thaliana plants at 7 and 10 dpi	Non-coding RNA profiling by high throughput sequencing	Turnip mosaic virus Arabidopsis thaliana	36	TXT	James C Carrington	Apr 09, 2010
GSE53688	3' and 5' end modifications in plant microRNA post biogenesis: evidences from NGS of small RNAs	Non-coding RNA profiling by high throughput sequencing	Solanum lycopersicum Oryza sativa Arabidopsis thaliana	20	TXT	Dinesh Gupta	Oct 24, 2015
GSE152570	Heritable enhanced growth vigor through grafting is associated with the RdDM pathway in plants	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Solanum lycopersicum Arabidopsis thaliana	54	TXT	Hardik Kundariya	Sep 20, 2020
GSE100498	Characterization of small RNAs expressed in roots and galls from Arabidopsis thaliana induced by the plant parasitic nematodes Meloidogyne incognita	Non-coding RNA profiling by high throughput sequencing	Meloidogyne incognita Arabidopsis thaliana	15	TXT SRA Run Selector	Kevin Lebrigand	Oct 04, 2017
GSE67613	Secondary siRNAs from Medicago NB-LRRs modulated via miRNA-target interactions and their abundances	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Medicago truncatula Arabidopsis thaliana	50	TXT SRA Run Selector	Blake C. Meyers	Jun 20, 2015
GSE36338	A Role for Small RNAs in DNA Double-Strand Break Repair	Non-coding RNA profiling by high throughput sequencing	Homo sapiens Arabidopsis thaliana	33	TXT SRA Run Selector	Yijun Qi	Mar 27, 2012
GSE47121	Improved genome-wide mapping of uncapped and cleaved transcripts in eukaryotes—GMUCT 2.0	Non-coding RNA profiling by high throughput sequencing	Homo sapiens Arabidopsis thaliana	10	TXT SRA Run Selector	Nathan Daniel Berkowitz	Mar 08, 2014
GSE84955	Small RNAs from Cuscuta campestris parasitizing Arabidopsis thaliana	Non-coding RNA profiling by high throughput sequencing	Cuscuta pentagona Arabidopsis thaliana	6	TXT SRA Run Selector	Michael J Axtell	Dec 18, 2017
GSE136847	Polymerase IV Plays a Crucial Role in Pollen Development in Capsella	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Capsella rubella Arabidopsis thaliana	32	TXT SRA Run Selector	Juan C Santos-González	Jan 23, 2020
GSE153233	Two miRNAs are sufficient for C. elegans embryogenesis	Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans Arabidopsis thaliana	27	TXT SRA Run Selector	Jingkui Wang	Nov 21, 2020
GSE10036	Small RNAs in four Argonaute complexes in Arabidopsis	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	4	TXT	Tao Cai	Apr 06, 2008
GSE10967	Highly integrated epigenome maps in Arabidopsis - small RNA sequencing	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	4	TXT SRA Run Selector	Joseph R Ecker	Apr 21, 2008
GSE11070	A link between RNA metabolism and silencing affecting Arabidopsis development	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by genome tiling array	Arabidopsis thaliana	22	CEL TXT SRA Run Selector	Joseph R Ecker	May 15, 2008