GEO Browser - GEO

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19 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Third-party reanalysis			BIGWIG
GSE66031	Identification of active transcriptional regulatory elements with GRO-seq	Expression profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	2	BED BIGWIG BW TXT SRA Run Selector	Charles G Danko	Feb 19, 2015
GSE88699	High activity of a broad panel of housekeeping and tissue-specific cis-regulatory elements depends on a subset of ETS proteins	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Mus musculus	15	BED BIGWIG TXT SRA Run Selector	Alberto Termanini	Mar 13, 2017
GSE88702	High activity of a broad panel of housekeeping and tissue-specific cis-regulatory elements depends on a subset of ETS proteins	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Third-party reanalysis	Mus musculus	23	BED BIGWIG	Alberto Termanini	Mar 13, 2017
GSE102393	Nuclear receptor Nur77 limits the macrophage inflammatory response by reprogramming mitochondrial metabolism (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Mus musculus	3	BED BIGWIG TXT SRA Run Selector	Carlie de Vries	Aug 21, 2018
GSE102394	Nuclear receptor Nur77 limits the macrophage inflammatory response by reprogramming mitochondrial metabolism	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Mus musculus	9	BED BIGWIG TXT	Carlie de Vries	Aug 21, 2018
GSE137018	Loss of Lysine-Specific Demethylase 1 (LSD1) Drives Aberrant Heterochromatin Formation in Neurospora crassa	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Third-party reanalysis	Neurospora crassa	16	BED BIGWIG IGV TDF TXT SRA Run Selector	Eric U Selker	Aug 18, 2020
GSE141516	Genome-wide maps of ZCWPW1 in HEK293T cells with or without PRDM9, plus DMC1 ChIP-seq in ZCWPW1 KO mouse	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens Mus musculus	6	BED BEDGRAPH BIGWIG XLS SRA Run Selector	Simon Myers	Aug 01, 2020
GSE155244	An atlas of lamina-associated chromatin across thirteen human cell types reveals cell-type-specific and multiple subtypes of peripheral heterochromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	76	BED BIGWIG TSV SRA Run Selector	Rajan Jain	Dec 13, 2022
GSE231492	Dimeric G-quadruplex motifs-induced NFRs determine strong replication origins in vertebrates	Third-party reanalysis Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Homo sapiens Mus musculus	14	BED BIGWIG NARROWPEAK	Caroline Tonnerre-Doncarli	Jul 19, 2023
GSE62742	Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	249	BEDPE BIGWIG NARROWPEAK TXT SRA Run Selector	Fabian Grubert	Aug 20, 2015
GSE73145	Chromatin dynamics and the RNA exosome function in concert to regulate transcriptional homeostasis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by genome tiling array Third-party reanalysis	Saccharomyces cerevisiae	34	BIGWIG CEL	Craig L Peterson	Nov 12, 2015
GSE98092	Mammalian low cell number and in vivo DamID-seq for transcription factor binding analyses	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Mus musculus	58	BIGWIG SRA Run Selector	Keisuke Kaji	Mar 13, 2018
GSE128160	Mechanisms of heat-induced transcriptional memory profiled in mouse embryonic fibroblasts (MEFs).	Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	20	BIGWIG SRA Run Selector	Anniina Vihervaara	Mar 04, 2020
GSE128317	Evolutionarily ancient BAH-PHD protein mediates Polycomb silencing in Neurospora crassa	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Neurospora crassa	16	BIGWIG TXT SRA Run Selector	Elizabeth Toomey Wiles	Apr 15, 2020
GSE137098	Embryonic stem cell-derived neurons as a model system for epigenome maturation during development	Methylation profiling by high throughput sequencing Third-party reanalysis Expression profiling by high throughput sequencing	Mus musculus	53	BIGWIG GTF TXT SRA Run Selector	Ryan Lister	Jul 25, 2023
GSE138846	Drosophila, which Lacks Canonical Transcription-Coupled Repair Proteins, Performs Transcription-Coupled Repair	Other Third-party reanalysis	Drosophila melanogaster Homo sapiens	12	BIGWIG TXT SRA Run Selector	Yanyan Yang	Oct 16, 2019
GSE205285	Mouse single positive thymocyte bulk RNA-seq from Kmt2d knockout and control littermates.	Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	18	BIGWIG TSV TXT	Sarah J Potter	May 03, 2024
GSE237359	A novel human fetal lung-derived alveolar organoid model reveals mechanisms of surfactant protein C maturation relevant to interstitial lung disease	Expression profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	9	BIGWIG H5AD TSV	Kyungtae Lim	Aug 31, 2023
GSE247171	Deterioration of multi-level 3D genome organization during breast cancer progression [third-party re-analysis]	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens		BIGWIG BROADPEAK NARROWPEAK TXT	Roberto Rossini	Aug 06, 2024