GEO Browser - GEO

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68 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Third-party reanalysis			BW
GSE164906	"Stripe" transcription factors provide accessibility to co-binding partners in mammalian genomes.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis Genome variation profiling by high throughput sequencing	Mus musculus	476	BW TAB VCF	Yongbing Zhao	Jul 21, 2022
GSE128818	Aberrant phase separation of transcription factors in human developmental disorders	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Gallus gallus Mus musculus	19	BED BW MTX TSV SRA Run Selector	Denes Hnisz	May 07, 2020
GSE234139	Accessibility and activity of transcriptional regulatory elements during sea urchin embryogenesis and differentiation [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Strongylocentrotus purpuratus	15	BED BW NARROWPEAK	Cesar Arenas-Mena	Jul 27, 2023
GSE234140	Accessibility and activity of transcriptional regulatory elements during sea urchin embryogenesis and differentiation [PRO-seq]	Other Third-party reanalysis	Strongylocentrotus purpuratus	17	BED BW	Cesar Arenas-Mena	Jul 27, 2023
GSE133833	Allele-specific NKX2-5 binding underlies multiple genetic associations with human electrocardiographic traits	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis Expression profiling by high throughput sequencing	Homo sapiens	32	BED BW TXT SRA Run Selector	Kelly Ann Frazer	Jul 12, 2019
GSE256262	Alternative isoform expression of key thermogenic genes in human beige adipocytes	Third-party reanalysis Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	46	BROADPEAK BW NARROWPEAK	Philippe Collas	May 14, 2024
GSE137305	An Xist-dependent protein assembly mediates Xist localization and gene silencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Mus musculus	8	BW SRA Run Selector	Kathrin Plath	Sep 03, 2020
GSE131417	BAMscale: quantification of DNA sequencing peaks and generation of scaled coverage tracks	Other Third-party reanalysis	Homo sapiens Mus musculus	3	BED BW SRA Run Selector	Lorinc Pongor	May 17, 2020
GSE272483	CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Third-party reanalysis	Mus musculus	54	BW NARROWPEAK TAR	Lucille Lopez-Delisle	Jul 18, 2024
GSE272382	CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length [ChIPM]	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Mus musculus	4	BW NARROWPEAK	Lucille Lopez-Delisle	Jul 18, 2024
GSE272387	CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length [RNA-seq gastruloid]	Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	26	BW TXT	Lucille Lopez-Delisle	Jul 18, 2024
GSE247511	Cadherins modulate the self-organizing potential of gastruloids	Expression profiling by high throughput sequencing Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	83	BW LOOM NARROWPEAK TAR	ALEXANDRE MAYRAN	Jul 18, 2024
GSE247510	Cadherins modulate the self-organizing potential of gastruloids (re-analysis)	Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus		BW TXT	ALEXANDRE MAYRAN	Jul 18, 2024
GSE130290	ChIP-seq of DRD1, DMS3 and RDM1 in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	4	BED BW SRA Run Selector	Steven E. Jacobsen	Jul 09, 2019
GSE229943	Chromatin and gene expression changes during female Drosophila germline stem cell development.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Drosophila melanogaster	28	BEDGRAPH BW CSV TXT	Allan C Spradling	Aug 16, 2023
GSE199190	Chromatin profiles classify castration-resistant prostate cancers suggesting therapeutic targets	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	134	BW	Yu Chen	Mar 22, 2022
GSE128678	Common DNA sequence variation influences 3-dimensional conformation of the human genome	Other Third-party reanalysis	Homo sapiens	38	BW MAT SRA Run Selector	Yunjiang Qiu	Oct 02, 2019
GSE59801	Comparative epigenomics of human and mouse erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Austrofundulus limnaeus Homo sapiens Mus musculus		BED BW TXT	Vijay G Sankaran	Dec 01, 2014
GSE111902	Compendium of CD8+ T cell Data	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	67	BROADPEAK BW NARROWPEAK TSV TXT SRA Run Selector	Robert Anthony Amezquita	Mar 17, 2018
GSE164904	Comprehensive maps of transcription factor (TF) binding sites in mouse (ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Mus musculus	88	BW XLSX SRA Run Selector	Yongbing Zhao	Jul 21, 2022