GEO Browser - GEO

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26 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Third-party reanalysis			NARROWPEAK
GSE62742	Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	249	BEDPE BIGWIG NARROWPEAK TXT SRA Run Selector	Fabian Grubert	Aug 20, 2015
GSE95071	Loss of the Caenorhabditis elegans pocket protein LIN-35 reveals MuvB’s innate function as the repressor of DREAM target genes	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Caenorhabditis elegans	46	BW NARROWPEAK SRA Run Selector	Paul Goetsch	Oct 25, 2017
GSE111902	Compendium of CD8+ T cell Data	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	67	BROADPEAK BW NARROWPEAK TSV TXT SRA Run Selector	Robert Anthony Amezquita	Mar 17, 2018
GSE115438	Positional specificity of different transcription factor classes within enhancers	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	2	GAPPEDPEAK NARROWPEAK SRA Run Selector	Sharon R Grossman	Jun 07, 2018
GSE115317	Coronary artery disease genes SMAD3 and TCF21 promote opposing interactive genetic programs that regulate smooth muscle cell differentiation and disease risk [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	2	BW NARROWPEAK SRA Run Selector	Thomas Quertermous	Sep 11, 2018
GSE115319	Coronary artery disease genes SMAD3 and TCF21 promote opposing interactive genetic programs that regulate smooth muscle cell differentiation and disease risk	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	8	BW NARROWPEAK	Thomas Quertermous	Sep 11, 2018
GSE98509	MYOD Remodeling of the Genome Architecture during Myogenic Conversion of Somatic Cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis Other	Homo sapiens	16	BED BW CSV NARROWPEAK TXT SRA Run Selector	Alessandra Dall'Agnese	Sep 10, 2019
GSE144900	Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin [sperm - third party reanalysis]	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana Homo sapiens		BROADPEAK BW NARROWPEAK	Michael Borg	Mar 17, 2020
GSE63286	Kdm5b depletion in embryonic stem cells does not induce intragenic promoters or affect transcription [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Mus musculus	4	NARROWPEAK TXT SRA Run Selector	Andrew Johnston	Mar 21, 2020
GSE161377	DBX2 REGULATION IN LIMBS SUGGESTS INTER-TAD SHARING OF ENHANCERS [ChIP-Seq reanalysis]	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Mus musculus		BROADPEAK BW NARROWPEAK TXT	Lucille Lopez-Delisle	Jan 23, 2021
GSE165495	Mesomelic Dysplasias Associated With The HOXD Locus Are Caused By Regulatory Reallocations	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	23	BW COOL NARROWPEAK TAR TXT	Lucille Lopez-Delisle	Jul 20, 2021
GSE165761	Mesomelic Dysplasias Associated With The HOXD Locus Are Caused By Regulatory Reallocations [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Mus musculus		BW NARROWPEAK	Lucille Lopez-Delisle	Jul 20, 2021
GSE185128	EWS/FLI mediated reprogramming of 3D chromatin promotes an altered transcriptional state in Ewing sarcoma (Cut&Tag III)	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens		BED BW NARROWPEAK TXT	Iftekhar Ahmed Showpnil	Aug 15, 2022
GSE231492	Dimeric G-quadruplex motifs-induced NFRs determine strong replication origins in vertebrates	Third-party reanalysis Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Homo sapiens Mus musculus	14	BED BIGWIG NARROWPEAK	Caroline Tonnerre-Doncarli	Jul 19, 2023
GSE234139	Accessibility and activity of transcriptional regulatory elements during sea urchin embryogenesis and differentiation [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Strongylocentrotus purpuratus	15	BED BW NARROWPEAK	Cesar Arenas-Mena	Jul 27, 2023
GSE234143	Widespread priming of transcriptional regulatory elements by incipient accessibility or Pol II pause in early embryos of the sea urchin Strongylocentrotus purpuratus	Genome binding/occupancy profiling by high throughput sequencing Other Third-party reanalysis	Strongylocentrotus purpuratus	32	BW NARROWPEAK	Cesar Arenas-Mena	Jul 27, 2023
GSE215022	Targeting DCAF5 suppresses SMARCB1-mutant cancer via stabilizing SWI/SNF	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	24	BW NARROWPEAK	Jacquelyn A Myers	Mar 22, 2024
GSE250367	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Danio rerio Mus musculus	3	BW NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE188559	Shared patterns of glial transcriptional dysregulation link Huntington's disease and schizophrenia	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens Rattus norvegicus	2	BW NARROWPEAK TXT SRA Run Selector	Steven Goldman	May 08, 2024
GSE188561	Shared patterns of glial transcriptional dysregulation link Huntington's disease and schizophrenia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	139	BW NARROWPEAK	Steven Goldman	May 08, 2024